fix(test): snapshot renaming

app-testing/.gitignore

@@ -1,5 +1,5 @@
 .env
 results
 analysis_results/*.json
-files/generated_protocols/*
-!files/generated_protocols/.keepme
+files/protocols/generated_protocols/*
+!files/protocols/generated_protocols/.keepme

app-testing/automation/data/protocol_registry.py

@@ -1,4 +1,5 @@
 import os
+from pathlib import Path
 from typing import Optional
 
 from rich.console import Console
@@ -42,21 +43,42 @@ def all_defined_protocols_with_overrides(self) -> list[ProtocolWithOverrides]:
         return [getattr(self.protocols_with_overrides, prop) for prop in dir(self.protocols_with_overrides) if "__" not in prop]
 
 
+def all_stems() -> set[str]:
+    dir_path = Path(Path(__file__).resolve().parent.parent.parent, os.getenv("FILES_FOLDER", "files"), "protocols")
+    file_stems = {file.stem for file in dir_path.glob("*.py")}
+    return file_stems
+
+
 def main() -> None:
     console = Console()
     protocol_registry = ProtocolRegistry()
     console.print("protocols for APP_ANALYSIS_TEST_PROTOCOLS")
-    console.print(Panel('Formatted for .env APP_ANALYSIS_TEST_PROTOCOLS="'))
-    sorted_stems = sorted([p.file_stem for p in protocol_registry.all_defined_protocols()])
+    console.print(Panel("Formatted for .env"))
+    regular_stems = sorted([p.file_stem for p in protocol_registry.all_defined_protocols()])
     console.print('APP_ANALYSIS_TEST_PROTOCOLS="')
-    console.print(",\n".join(sorted_stems))
+    console.print(",\n".join(regular_stems))
     console.print('"')
-    console.print(Panel('Formatted for .env APP_ANALYSIS_TEST_PROTOCOLS_WITH_OVERRIDES="'))
+    override_stems = sorted([p.file_stem for p in protocol_registry.all_defined_protocols_with_overrides()])
     console.print('APP_ANALYSIS_TEST_PROTOCOLS_WITH_OVERRIDES="')
-    sorted_stems = sorted([p.file_stem for p in protocol_registry.all_defined_protocols_with_overrides()])
-    console.print(",\n".join(sorted_stems))
+    console.print(",\n".join(override_stems))
     console.print('"')
 
+    all_files = all_stems()
+    filtered_stems = {stem for stem in all_files if "overrides" not in stem.lower()}
+    found_override_stems = {stem for stem in all_files if "overrides" in stem.lower()}
+    # Finding and displaying differences
+    differences = filtered_stems - set(regular_stems)
+    if differences:
+        console.print(f"Stems in actual files not in mapping: {differences}")
+    else:
+        console.print("No differences between files and mapping.")
+
+    differences = found_override_stems - set(override_stems)
+    if differences:
+        console.print(f"Override Stems in actual files not in mapping: {differences}")
+    else:
+        console.print("No differences between actual override protocols and the mapping.")
+
 
 if __name__ == "__main__":
     main()

app-testing/automation/data/protocol_with_overrides.py

@@ -28,7 +28,7 @@ def create_protocols(self) -> None:
             new_file_name = f"{new_file_stem}.{self.file_extension}"
             # Create the full path for the new file
             # all generated files live at files/protocols/$GENERATED_PROTOCOLS_FOLDER
-            new_file_path = Path(self.file_path.parent.parent, GENERATED_PROTOCOLS_FOLDER, new_file_name)
+            new_file_path = Path(self.file_path.parent, GENERATED_PROTOCOLS_FOLDER, new_file_name)
             # Prepare the override string to prepend
             override_string = f'{self.override_variable_name} = "{override}"\n'
             # Write the new file with the override string prepended

app-testing/automation/data/protocols.py

@@ -21,15 +21,6 @@ class Protocols:
         robot_error=False,
     )
 
-    OT2_S_v6_P20S_P300M_HS_HSCollision: Protocol = Protocol(
-        file_stem="OT2_S_v6_P20S_P300M_HS_HSCollision",
-        file_extension="json",
-        robot="OT2",
-        app_error=False,
-        robot_error=False,
-        description="""This protocol gives an error in PD.8-Channel pipette cannot access labware8-Channel pipettes cannot access labware or tip racks to the left or right of a Heater-Shaker GEN1 module. Move labware to a different slot to access it with an 8-Channel pipette.If you export it anyway there are NOT analysis errors in the app side analysis.TODO on if there are robot side analysis errors but do not expect them?""",  # noqa: E501
-    )
-
     OT2_S_v6_P20S_P300M_TransferReTransferLiquid: Protocol = Protocol(
         file_stem="OT2_S_v6_P20S_P300M_TransferReTransferLiquid",
         file_extension="json",
@@ -299,41 +290,41 @@ class Protocols:
         robot_error=False,
     )
 
-    OT2_X_v2_17_P300M_P20S_HS_TC_TM_dispense_changes: Protocol = Protocol(
-        file_stem="OT2_X_v2_17_P300M_P20S_HS_TC_TM_dispense_changes",
+    OT2_S_v2_17_P300M_P20S_HS_TC_TM_dispense_changes: Protocol = Protocol(
+        file_stem="OT2_S_v2_17_P300M_P20S_HS_TC_TM_dispense_changes",
         file_extension="py",
         robot="OT2",
         app_error=True,
         robot_error=False,
         app_analysis_error="ValueError [line 15]: Cannot dispense more than pipette max volume",  # noqa: E501
     )
 
-    OT2_S_v2_14_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots: Protocol = Protocol(
-        file_stem="OT2_S_v2_14_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots",
+    OT2_S_v2_14_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots: Protocol = Protocol(
+        file_stem="OT2_S_v2_14_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots",
         file_extension="py",
         robot="OT2",
         app_error=False,
         robot_error=False,
     )
 
-    OT2_S_v2_15_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots: Protocol = Protocol(
-        file_stem="OT2_S_v2_15_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots",
+    OT2_S_v2_15_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots: Protocol = Protocol(
+        file_stem="OT2_S_v2_15_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots",
         file_extension="py",
         robot="OT2",
         app_error=False,
         robot_error=False,
     )
 
-    OT2_X_v2_16_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots: Protocol = Protocol(
-        file_stem="OT2_X_v2_16_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots",
+    OT2_S_v2_16_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots: Protocol = Protocol(
+        file_stem="OT2_S_v2_16_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots",
         file_extension="py",
         robot="OT2",
         app_error=False,
         robot_error=False,
     )
 
-    OT2_S_v2_17_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots: Protocol = Protocol(
-        file_stem="OT2_S_v2_17_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots",
+    OT2_S_v2_17_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots: Protocol = Protocol(
+        file_stem="OT2_S_v2_17_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots",
         file_extension="py",
         robot="OT2",
         app_error=False,
@@ -603,32 +594,24 @@ class Protocols:
         robot_error=False,
     )
 
-    Flex_S_v2_14_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots: Protocol = Protocol(
-        file_stem="Flex_S_v2_14_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots",
-        file_extension="py",
-        robot="Flex",
-        app_error=False,
-        robot_error=False,
-    )
-
-    Flex_S_v2_15_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots: Protocol = Protocol(
-        file_stem="Flex_S_v2_15_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots",
+    Flex_S_v2_15_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots: Protocol = Protocol(
+        file_stem="Flex_S_v2_15_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots",
         file_extension="py",
         robot="Flex",
         app_error=False,
         robot_error=False,
     )
 
-    Flex_S_v2_16_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots: Protocol = Protocol(
-        file_stem="Flex_S_v2_16_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots",
+    Flex_S_v2_16_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots: Protocol = Protocol(
+        file_stem="Flex_S_v2_16_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots",
         file_extension="py",
         robot="Flex",
         app_error=False,
         robot_error=False,
     )
 
-    Flex_S_v2_17_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots: Protocol = Protocol(
-        file_stem="Flex_S_v2_17_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots",
+    Flex_S_v2_17_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots: Protocol = Protocol(
+        file_stem="Flex_S_v2_17_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots",
         file_extension="py",
         robot="Flex",
         app_error=False,

app-testing/example.env

@@ -18,8 +18,7 @@ TARGET=edge
 # dynamically generate with make print-protocols
 
 APP_ANALYSIS_TEST_PROTOCOLS="
-Flex_S_v2_14_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots,
-Flex_S_v2_15_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots,
+Flex_S_v2_15_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots,
 Flex_S_v2_15_P1000M_P50M_GRIP_HS_MB_TC_TM_IlluminaDNAEnrichment,
 Flex_S_v2_15_P1000M_P50M_GRIP_HS_MB_TC_TM_IlluminaDNAEnrichmentv4,
 Flex_S_v2_15_P1000M_P50M_GRIP_HS_MB_TC_TM_IlluminaDNAPrep24x,
@@ -30,7 +29,7 @@ Flex_S_v2_15_P1000_96_GRIP_HS_MB_TM_MagMaxRNAExtraction,
 Flex_S_v2_15_P1000_96_GRIP_HS_MB_TM_OmegaHDQDNAExtraction,
 Flex_S_v2_15_P1000_96_GRIP_HS_TM_QuickZymoMagbeadRNAExtraction,
 Flex_S_v2_15_P50M_P1000M_KAPALibraryQuantLongv2,
-Flex_S_v2_16_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots,
+Flex_S_v2_16_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots,
 Flex_S_v2_16_P1000_96_GRIP_DeckConfiguration1NoModules,
 Flex_S_v2_16_P1000_96_GRIP_DeckConfiguration1NoModulesNoFixtures,
 Flex_S_v2_16_P1000_96_GRIP_HS_MB_TC_TM_DeckConfiguration1,
@@ -39,7 +38,7 @@ Flex_S_v2_16_P1000_96_GRIP_HS_MB_TC_TM_Smoke,
 Flex_S_v2_16_P1000_96_GRIP_HS_MB_TC_TM_TriggerPrepareForMountMovement,
 Flex_S_v2_16_P1000_96_TC_PartialTipPickupColumn,
 Flex_S_v2_16_P1000_96_TC_PartialTipPickupSingle,
-Flex_S_v2_17_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots,
+Flex_S_v2_17_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots,
 Flex_S_v2_18_NO_PIPETTES_GoldenRTP,
 Flex_X_v2_16_NO_PIPETTES_AccessToFixedTrashProp,
 Flex_X_v2_16_NO_PIPETTES_MM_MagneticModuleInFlexProtocol,
@@ -65,19 +64,21 @@ OT2_S_v2_12_NO_PIPETTES_Python310SyntaxRobotAnalysisOnlyError,
 OT2_S_v2_12_P300M_P20S_FailOnRun,
 OT2_S_v2_13_P300M_P20S_HS_TC_TM_SmokeTestV3,
 OT2_S_v2_13_P300M_P20S_MM_TC_TM_Smoke620Release,
-OT2_S_v2_14_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots,
+OT2_S_v2_14_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots,
 OT2_S_v2_14_P300M_P20S_HS_TC_TM_SmokeTestV3,
-OT2_S_v2_15_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots,
+OT2_S_v2_15_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots,
 OT2_S_v2_15_P300M_P20S_HS_TC_TM_SmokeTestV3,
 OT2_S_v2_15_P300M_P20S_HS_TC_TM_dispense_changes,
+OT2_S_v2_16_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots,
 OT2_S_v2_16_NO_PIPETTES_verifyDoesNotDeadlock,
 OT2_S_v2_16_P300M_P20S_HS_TC_TM_SmokeTestV3,
 OT2_S_v2_16_P300M_P20S_HS_TC_TM_aspirateDispenseMix0Volume,
 OT2_S_v2_16_P300M_P20S_HS_TC_TM_dispense_changes,
 OT2_S_v2_16_P300M_P20S_aspirateDispenseMix0Volume,
 OT2_S_v2_16_P300S_None_verifyNoFloatingPointErrorInPipetting,
-OT2_S_v2_17_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots,
+OT2_S_v2_17_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots,
 OT2_S_v2_17_P300M_P20S_HS_TC_TM_SmokeTestV3,
+OT2_S_v2_17_P300M_P20S_HS_TC_TM_dispense_changes,
 OT2_S_v2_18_NO_PIPETTES_GoldenRTP_OT2,
 OT2_S_v2_18_None_None_duplicateChoiceValue,
 OT2_S_v2_2_P300S_None_MM1_MM2_EngageMagHeightFromBase,
@@ -88,17 +89,14 @@ OT2_S_v3_P300SGen1_None_Gen1PipetteSimple,
 OT2_S_v4_P300M_P20S_MM_TM_TC1_PD40,
 OT2_S_v4_P300S_None_MM_TM_TM_MOAMTemps,
 OT2_S_v6_P1000S_None_SimpleTransfer,
-OT2_S_v6_P20S_P300M_HS_HSCollision,
 OT2_S_v6_P20S_P300M_TransferReTransferLiquid,
 OT2_S_v6_P300M_P20S_HS_Smoke620release,
 OT2_S_v6_P300M_P20S_MixTransferManyLiquids,
 OT2_S_v6_P300M_P300S_HS_HS_NormalUseWithTransfer,
 OT2_X_v2_11_P300S_TC1_TC2_ThermocyclerMoamError,
 OT2_X_v2_13_None_None_PythonSyntaxError,
-OT2_X_v2_16_NO_PIPETTES_TC_verifyThermocyclerLoadedSlots,
 OT2_X_v2_16_None_None_HS_HeaterShakerConflictWithTrashBin1,
 OT2_X_v2_16_None_None_HS_HeaterShakerConflictWithTrashBin2,
-OT2_X_v2_17_P300M_P20S_HS_TC_TM_dispense_changes,
 OT2_X_v2_18_None_None_NoRTPdisplay_name,
 OT2_X_v2_18_None_None_StrRTPwith_unit,
 OT2_X_v2_18_None_None_duplicateRTPVariableName,
@@ -107,7 +105,6 @@ OT2_X_v4_P300M_P20S_MM_TC1_TM_e2eTests,
 OT2_X_v6_P20S_None_SimpleTransfer,
 OT2_X_v6_P300M_P20S_HS_MM_TM_TC_AllMods
 "
-
 APP_ANALYSIS_TEST_PROTOCOLS_WITH_OVERRIDES="
 Flex_X_v2_18_NO_PIPETTES_Overrides_BadTypesInRTP,
 Flex_X_v2_18_NO_PIPETTES_Overrides_DefaultChoiceNoMatchChoice,

app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[5887e734b5][OT2_P10S_P300M_TC1_TM_MM_2_11_Swift].json → app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[004ebb2b82][OT2_S_v2_11_P10S_P300M_MM_TC1_TM_Swift].json

@@ -14171,7 +14171,7 @@
   "errors": [],
   "files": [
     {
-      "name": "OT2_P10S_P300M_TC1_TM_MM_2_11_Swift.py",
+      "name": "OT2_S_v2_11_P10S_P300M_MM_TC1_TM_Swift.py",
       "role": "main"
     },
     {

app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[0f71566d05][OT2_P20S_None_2_7_Walkthrough].json → app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[011481812b][OT2_S_v2_7_P20S_None_Walkthrough].json

@@ -4256,7 +4256,7 @@
   "errors": [],
   "files": [
     {
-      "name": "OT2_P20S_None_2_7_Walkthrough.py",
+      "name": "OT2_S_v2_7_P20S_None_Walkthrough.py",
       "role": "main"
     },
     {

app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[a01dac3953][Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures].json → app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[0190369ce5][Flex_S_v2_16_P1000_96_GRIP_HS_MB_TC_TM_DeckConfiguration1NoFixtures].json

@@ -10424,7 +10424,7 @@
   "errors": [],
   "files": [
     {
-      "name": "Flex_P1000_96_GRIPPER_HS_TM_TC_MB_2_16_DeckConfiguration1_NoFixtures.py",
+      "name": "Flex_S_v2_16_P1000_96_GRIP_HS_MB_TC_TM_DeckConfiguration1NoFixtures.py",
       "role": "main"
     },
     {

app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[aaab7be350][OT2_P300M_P20S_2_16_aspirateDispenseMix0Volume].json → app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[0256665840][OT2_S_v2_16_P300M_P20S_aspirateDispenseMix0Volume].json

@@ -2775,7 +2775,7 @@
   "errors": [],
   "files": [
     {
-      "name": "OT2_P300M_P20S_2_16_aspirateDispenseMix0Volume.py",
+      "name": "OT2_S_v2_16_P300M_P20S_aspirateDispenseMix0Volume.py",
       "role": "main"
     },
     {

app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[cf3e610e54][OT2_P300M_P20S_TC_HS_TM_2_15_dispense_changes].json → app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[041ad55e7b][OT2_S_v2_15_P300M_P20S_HS_TC_TM_dispense_changes].json

@@ -2965,7 +2965,7 @@
   "errors": [],
   "files": [
     {
-      "name": "OT2_P300M_P20S_TC_HS_TM_2_15_dispense_changes.py",
+      "name": "OT2_S_v2_15_P300M_P20S_HS_TC_TM_dispense_changes.py",
       "role": "main"
     },
     {

app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[8d6b8b90fd][OT2_None_None_TC_2_14_VerifyThermocyclerLoadedSlots].json → app-testing/tests/__snapshots__/analyses_snapshot_test/test_analysis_snapshot[09ba51132a][OT2_S_v2_14_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots].json

@@ -127,7 +127,7 @@
   "errors": [],
   "files": [
     {
-      "name": "OT2_None_None_TC_2_14_VerifyThermocyclerLoadedSlots.py",
+      "name": "OT2_S_v2_14_NO_PIPETTES_TC_VerifyThermocyclerLoadedSlots.py",
       "role": "main"
     },
     {