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Releases: PNNL-Comp-Mass-Spec/MSnSet.utils

v0.1.0

14 Apr 05:42
@TylerSagendorf TylerSagendorf
v0.1.0
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Changes since December 27, 2021:

  • Added complex_heatmap function to more easily create annotated expression and correlation heatmaps from MSnSet objects. This is a wrapper around functions from the ComplexHeatmap package.
  • Added vignette for complex_heatmap.
  • Removed plot_sample_correlation_heatmap and plot_sample_correlation_pheatmap. Functionality has been absorbed by complex_heatmap.
  • Added plot_upset function to create labeled UpSet plots. This is a wrapper around functions from the ComplexHeatmap package.
  • Updated limma_contrasts to add the option to specify which test statistic to report (moderated t or F). Also add multi-dimensional scaling (MDS) plot to new limma_diagnostics helper function (not exported).
  • Removed row names from output of msnset2txt.
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