Skip to content

HiPhase v0.10.0
Compare
Choose a tag to compare
@holtjma holtjma released this 24 May 18:11
· 32 commits to main since this release
v0.10.0
1ec04d1
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Changes

  • Adds support for multi-threaded BAM I/O via shared thread pools. Internal testing with default parameters showed ~40% reduction in wall-clock time when haplotagging is enabled with 16 threads. User experience will vary based on file type, disk type, and I/O contention. Resolves #9.
  • Adds --io-threads option for greater control over the number of threads used in the thread pool. Defaults to the same number provided to --threads.
Assets 3
Loading