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armintoepfer committed Apr 19, 2022
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34 changes: 34 additions & 0 deletions LICENSE.txt
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Copyright (c) 2022, Pacific Biosciences of California, Inc.

All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted (subject to the limitations in the
disclaimer below) provided that the following conditions are met:

* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following
disclaimer in the documentation and/or other materials provided
with the distribution.

* Neither the name of Pacific Biosciences nor the names of its
contributors may be used to endorse or promote products derived
from this software without specific prior written permission.

NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
SUCH DAMAGE.
26 changes: 26 additions & 0 deletions README.md
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<h1 align="center">pbtk</h1>
<p align="center">PacBio BAM toolkit</p>

***

## Availability

Latest version can be installed via bioconda package `pbtk`.

Please refer to our [official pbbioconda page](https://github.com/PacificBiosciences/pbbioconda)
for information on Installation, Support, License, Copyright, and Disclaimer.

## Tools

This repository is replacing individual tool repositories and binaries from `pbbam`.

* ccs-kinetics-bystrandify
* extracthifi
* pbindex
* pbindexdump
* pbmerge
* zmwfilter

## Usage

TBD

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