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Copyright (c) 2022, Pacific Biosciences of California, Inc. | ||
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All rights reserved. | ||
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Redistribution and use in source and binary forms, with or without | ||
modification, are permitted (subject to the limitations in the | ||
disclaimer below) provided that the following conditions are met: | ||
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* Redistributions of source code must retain the above copyright | ||
notice, this list of conditions and the following disclaimer. | ||
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* Redistributions in binary form must reproduce the above | ||
copyright notice, this list of conditions and the following | ||
disclaimer in the documentation and/or other materials provided | ||
with the distribution. | ||
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* Neither the name of Pacific Biosciences nor the names of its | ||
contributors may be used to endorse or promote products derived | ||
from this software without specific prior written permission. | ||
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NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE | ||
GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC | ||
BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED | ||
WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES | ||
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE | ||
DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS | ||
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, | ||
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT | ||
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF | ||
USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND | ||
ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, | ||
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT | ||
OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF | ||
SUCH DAMAGE. |
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<h1 align="center">pbtk</h1> | ||
<p align="center">PacBio BAM toolkit</p> | ||
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*** | ||
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## Availability | ||
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Latest version can be installed via bioconda package `pbtk`. | ||
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Please refer to our [official pbbioconda page](https://github.com/PacificBiosciences/pbbioconda) | ||
for information on Installation, Support, License, Copyright, and Disclaimer. | ||
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## Tools | ||
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This repository is replacing individual tool repositories and binaries from `pbbam`. | ||
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* ccs-kinetics-bystrandify | ||
* extracthifi | ||
* pbindex | ||
* pbindexdump | ||
* pbmerge | ||
* zmwfilter | ||
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## Usage | ||
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TBD |