Skip to content

TRGT v0.7.0
Compare
Choose a tag to compare
@pbsena pbsena released this 11 Dec 17:55
· 10 commits to main since this release
v0.7.0
ddb720b

Summary of changes:

  • Read phasing information can now be used during repeat genotyping (via HP tags)
  • Users can now define complex repeats by specifying motif sequences in the MOTIFS field and setting STRUC to <locus_name>
  • The original MAPQ values in the input reads are now reported in the BAM output
  • BAMlet sample name can now be provided using the --sample-name flag; if it not provided, it is extracted from the input BAM or file stem (addressing issue #18)

Contributors: Tom Mokveld, Guilherme De Sena Brandine, and Egor Dolzhenko

Note: TRGT is still in early development. It is not yet ready for benchmarking or production use. Please file an issue or reach out by email with questions, bug reports, and feature suggestions.

Linux binaries are available below.

Assets 4
Loading