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TRGT v1.2.0
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@tmokveld tmokveld released this 17 Sep 15:46
· 3 commits to main since this release
v1.2.0
32e65e8

Summary of changes:

  • trgt merge:
    • Multi-sample VCF Merging: Added support for merging TRGT VCFs with any number of samples, allowing updates to large, population-scale datasets with new samples.
    • Synced contig indexing: Introduced support for VCFs with inconsistent contig orderings. Additionally the new --contigs flag allows specifying a comma-separated list of contigs to be merged.
    • The reference genome is no longer required when merging TRGT VCFs from version 1.0.0 or later.
    • Merging now skips and logs problematic loci by default. Use the --quit-on-errors flag to terminate on errors. Statistics are logged post-merge, including counts of failed and skipped TRs.
  • trgt validate
    • Always outputs statistics directly to stdout and stderr instead of logging them.
  • Bug fix:
    • Resolved issue with handling bgzip-compressed BED files.

Note: TRGT is still in active development. Please file an issue or reach out by email with questions, bug reports, and feature suggestions.

Linux binaries are available below.

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