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Update README.md
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Add install_github directions
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katehoffshutta authored Feb 17, 2025
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Expand Up @@ -7,16 +7,24 @@ An R library of utilities for performing analyses on TCGA and GTEx data using th

# Installing

The package requires the "GenomicDataCommons", "edgeR", "recount", "recount3" bioconductor packages to be installed prior to the main installation.

To install and use the library you can use the following:
To install and use the library, you can clone the repository and use the following:

```R
install.packages("devtools")
devtools::install() # provided you are in the project folder
library(NetworkDataCompanion) # load the library in your code
```

You can also install directly from GitHub if you do not need the repository itself:

```{R}
library(devtools)
devtools::install_github("QuackenbushLab/NetworkDataCompanion")
library(NetworkDataCompanion)
```

The following packages may require separate installation: "GenomicDataCommons", "edgeR", "recount", "recount3"

# Usage

```R
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