-
Notifications
You must be signed in to change notification settings - Fork 988
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
fix warnings on CRAN #5696 #5712
Merged
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
netbsd-srcmastr
pushed a commit
to NetBSD/pkgsrc
that referenced
this pull request
Jan 25, 2024
# data.table [v1.14.10](https://github.com/Rdatatable/data.table/milestone/20) ## NOTES 1. Maintainer of the package for CRAN releases is from now on Tyson Barrett (@TysonStanley), [#5710](Rdatatable/data.table#5710). 2. Updated internal code for breaking change of `is.atomic(NULL)` in R-devel, [#5691](Rdatatable/data.table#5691). Thanks to Martin Maechler for the patch. 3. Fix multiple test concerning coercion to missing complex numbers, [#5695](Rdatatable/data.table#5695) and [#5748](Rdatatable/data.table#5748). Thanks to @MichaelChirico and @ben-schwen for the patches. 4. Fix multiple format warnings (e.g., -Wformat) [#5712](Rdatatable/data.table#5712), [#5781](Rdatatable/data.table#5781), [#5880](Rdatatable/data.table#5800), [#5786](Rdatatable/data.table#5786). Thanks to @MichaelChirico and @jangorecki for the patches. # data.table [v1.14.8](https://github.com/Rdatatable/data.table/milestone/28?closed=1) (17 Feb 2023) ## NOTES 1. Test 1613.605 now passes changes to `as.data.frame()` in R-devel, [#5597](Rdatatable/data.table#5597). Thanks to Avraham Adler for reporting. 2. An out of bounds read when combining non-equi join with `by=.EACHI` has been found and fixed thanks to clang ASAN, [#5598](Rdatatable/data.table#5598). There was no bug or consequence because the read was followed (now preceded) by a bounds test. 3. `.rbind.data.table` (note the leading `.`) is no longer exported when `data.table` is installed in R>=4.0.0 (Apr 2020), [#5600](Rdatatable/data.table#5600). It was never documented which R-devel now detects and warns about. It is only needed by `data.table` internals to support R<4.0.0; see note 1 in v1.12.6 (Oct 2019) below in this file for more details. # data.table [v1.14.6](https://github.com/Rdatatable/data.table/milestone/27?closed=1) (16 Nov 2022) ## BUG FIXES 1. `fread()` could leak memory, [#3292](Rdatatable/data.table#3292). Thanks to @patrickhowerter for reporting, and Jim Hester for the fix. The fix requires R 3.4.0 or later. Loading `data.table` in earlier versions now highlights this issue on startup, asks users to upgrade R, and warns that we intend to upgrade `data.table`'s dependency from 8 year old R 3.1.0 (April 2014) to 5 year old R 3.4.0 (April 2017). ## NOTES 1. Test 1962.098 has been modified to pass latest changes to `POSIXt` in R-devel. 2. `test.data.table()` no longer creates `DT` in `.GlobalEnv`, a CRAN policy violation, [#5514](Rdatatable/data.table#5514). No other writes occurred to `.GlobalEnv` and release procedures have been improved to prevent this happening again. 3. The memory usage of the test suite has been halved, [#5507](Rdatatable/data.table#5507). # data.table [v1.14.4](https://github.com/Rdatatable/data.table/milestone/26?closed=1) (17 Oct 2022) ## NOTES 1. gcc 12.1 (May 2022) now detects and warns about an always-false condition (`-Waddress`) in `fread` which caused a small efficiency saving never to be invoked, [#5476](Rdatatable/data.table#5476). Thanks to CRAN for testing latest versions of compilers. 2. `update.dev.pkg()` has been renamed `update_dev_pkg()` to get out of the way of the `stats::update` generic function, [#5421](Rdatatable/data.table#5421). This is a utility function which upgrades the version of `data.table` to the latest commit in development which has passed all tests. As such we don't expect any backwards compatibility concerns. Its manual page was causing an intermittent hang/crash from `R CMD check` on Windows-only on CRAN which we hope will be worked around by changing its name. 3. Internal C code now passes `-Wstrict-prototypes` to satisfy the warnings now displayed on CRAN, [#5477](Rdatatable/data.table#5477). 4. `write.csv` in R-devel no longer responds to `getOption("digits.secs")` for `POSIXct`, [#5478](Rdatatable/data.table#5478). This caused our tests of `fwrite(, dateTimeAs="write.csv")` to fail on CRAN's daily checks using latest daily R-devel. While R-devel discussion continues, and currently it seems like the change is intended with further changes possible, this `data.table` release massages our tests to pass on latest R-devel. The idea is to try to get out of the way of R-devel changes in this regard until the new behavior of `write.csv` is released and confirmed. Package updates are not accepted on CRAN if they do not pass the latest daily version of R-devel, even if R-devel changes after the package update is submitted. If the change to `write.csv()` stands, then a future release of `data.table` will be needed to make `fwrite(, dateTimeAs="write.csv")` match `write.csv()` output again in that future version of R onwards. If you use an older version of `data.table` than said future one in the said future version of R, then `fwrite(, dateTimeAs="write.csv")` may not match `write.csv()` if you are using `getOption("digits.secs")` too. However, you can always check that your installation of `data.table` works in your version of R on your platform by simply running `test.data.table()` yourself. Doing so would detect such a situation for you: test 1741 would fail in this case. `test.data.table()` runs the entire suite of tests and is always available to you locally. This way you do not need to rely on our statements about which combinations of versions of R and `data.table` on which platforms we have tested and support; just run `test.data.table()` yourself. Having said that, because test 1741 has been relaxed in this release in order to be accepted on CRAN to pass latest R-devel, this won't be true for this particular release in regard to this particular test. ```R $ R --vanilla R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid" > DF = data.frame(A=as.POSIXct("2022-10-01 01:23:45.012")) > options(digits.secs=0) > write.csv(DF) "","A" "1",2022-10-01 01:23:45 > options(digits.secs=3) > write.csv(DF) "","A" "1",2022-10-01 01:23:45.012 $ Rdevel --vanilla R Under development (unstable) (2022-10-06 r83040) -- "Unsuffered Consequences" > DF = data.frame(A=as.POSIXct("2022-10-01 01:23:45.012")) > options(digits.secs=0) > write.csv(DF) "","A" "1",2022-10-01 01:23:45.012 ``` 5. Many thanks to Kurt Hornik for investigating potential impact of a possible future change to `base::intersect()` on empty input, providing a patch so that `data.table` won't break if the change is made to R, and giving us plenty of notice, [#5183](Rdatatable/data.table#5183). 6. `datatable.[dll|so]` has changed name to `data_table.[dll|so]`, [#4442](Rdatatable/data.table#4442). Thanks to Jan Gorecki for the PR. We had previously removed the `.` since `.` is not allowed by the following paragraph in the Writing-R-Extensions manual. Replacing `.` with `_` instead now seems more consistent with the last sentence. > ... the basename of the DLL needs to be both a valid file name and valid as part of a C entry point (e.g. it cannot contain ‘.’): for portable code it is best to confine DLL names to be ASCII alphanumeric plus underscore. If entry point R_init_lib is not found it is also looked for with ‘.’ replaced by ‘_’. # data.table [v1.14.2](https://github.com/Rdatatable/data.table/milestone/24?closed=1) (27 Sep 2021) ## NOTES 1. clang 13.0.0 (Sep 2021) requires the system header `omp.h` to be included before R's headers, [#5122](Rdatatable/data.table#5122). Many thanks to Prof Ripley for testing and providing a patch file.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
closes #5696