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Contains my personal projects and sample codes for my students' coding courses.
👩‍💻
Contains my personal projects and sample codes for my students' coding courses.

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@DrNanoProjects

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Starred repositories

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Books and other resources

189 64 Updated Nov 29, 2024

Publicly available dataset for bioinformatics and integrative -omics research

43 7 Updated Apr 24, 2015

Notebooks from the course

Jupyter Notebook 1 1 Updated May 2, 2021
Jupyter Notebook 1 Updated Aug 23, 2021

Jupyter notebooks for introductory level bioinformatics

Jupyter Notebook 5 4 Updated Mar 25, 2019
Jupyter Notebook 3 Updated May 28, 2021

A tutorial on making phylogenetic trees in python

Jupyter Notebook 21 15 Updated Dec 8, 2020

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Python 608 93 Updated Jan 9, 2025

BioPython/scikit-bio tutorial for EuroSciPy 2018

Jupyter Notebook 13 5 Updated Aug 27, 2018

12 days of Biopython is a collection of 12 videos explaining in details how to work with Biopython, a bioinformatics tool using a real life examples.

Jupyter Notebook 54 33 Updated Sep 7, 2023

This is a repository that gently introduces Quantum Computing to anyone with no background in math, physics and computer science. This repo assumes no knowledge at all about Quantum Mechanics and w…

4 3 Updated Jan 18, 2022

Class Slides for Introduction to Quantum Computing

66 21 Updated Jan 5, 2023
HTML 1 1 Updated Mar 5, 2020

Purpose of this notebook was to identify and fix discrepancies between an internal dataset of spanin proteins which contained CDS calls that did not yield the expected protein sequence when transla…

Jupyter Notebook 1 Updated Sep 18, 2021

This repository contains a Jupyter Notebook that demonstrates an analysis of COVID-19 genome sequences. The goal of this project is to identify mutations and potential targets for drugs based on th…

Jupyter Notebook 2 Updated May 28, 2023

This notebook does the analysis of a protein sequence dataset in FASTA format. It addresses challenges in data import, alignment, embedding, and classification using bioinformatics tools and machin…

Jupyter Notebook 1 Updated Jun 14, 2024

My solutions to the assignments and projects of Machine Learning for Bioinformatics Course

Jupyter Notebook 8 2 Updated Mar 10, 2023

Official git repository for Biopython (originally converted from CVS)

Python 4,460 1,769 Updated Jan 21, 2025

Tools to Design or Visualize Architecture of Neural Network

4,590 585 Updated Jan 28, 2024

This repository contains my own coding solutions for the first 22 problems in bioinformatics stronghold section in Rosalind, all of these solutions are written in python programming language and al…

Jupyter Notebook 2 Updated Oct 15, 2023

Colab Notebook for anyone want to start using Python with genomics and bioinformatics in DNA.

Jupyter Notebook 1 Updated Apr 7, 2024

This repository is for collect python codes and jupyter notebooks when I used to solve bioinformatics problems.

Jupyter Notebook 2 1 Updated Jan 11, 2023

Here, I share notebooks, scripts and mardown files describing bioinformatics tools to analyse biological data.

Jupyter Notebook 1 Updated Apr 27, 2022

This is a collection of Python scripts, which I created using Jupyter Notebook, where I practiced solving typical bioinformatics problems as a part of my Bioinformatics (2111) course! I learned the…

Jupyter Notebook 1 Updated Mar 27, 2023

A couple of Python Jupyter Notebooks related to bioinformatics

Jupyter Notebook 1 Updated Mar 14, 2022

Bioinformatics libraries and notebooks with python and javascript

Jupyter Notebook 1 Updated Apr 29, 2019

Different tasks from the field of data science applied on typical bioinformatic data. Mainly used packages are numpy and scipy and the code is organized in jupyter notebooks.

Jupyter Notebook 9 2 Updated May 4, 2019

python implementations of bioinformatics algorithms to solve Rosalind problems

Jupyter Notebook 7 2 Updated Jul 14, 2020
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