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AnnabelChen51 authored Mar 29, 2022
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Expand Up @@ -3,8 +3,9 @@ __Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fa

This code implements a deep learning method for white matter fiber clustering using diffusion MRI data, as described in the following paper:

Yuqian Chen, Chaoyi Zhang, Yang Song, Tengfei Xue, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O’Donnell.
Yuqian Chen, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, Lauren J. O’Donnell.
Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation. (MICCAI 2021, travel award)

![figure1](https://user-images.githubusercontent.com/59594831/160573732-fa1881b2-780d-41bb-86b6-c4eb6cae801d.png)

## Installation
Expand All @@ -25,3 +26,6 @@ python test.py -indir <path of testing data> -modeldir <path of trainign model>
Effective fiber clustering was achieved with the proposed method. Below is a visualization of the obtained clusters.

![images](https://github.com/SlicerDMRI/DFC/blob/master/images/visualization%20of%20clusters.png)

## Reference
Chen, Yuqian, Chaoyi Zhang, Yang Song, Nikos Makris, Yogesh Rathi, Weidong Cai, Fan Zhang, and Lauren J. O’Donnell. ["Deep Fiber Clustering: Anatomically Informed Unsupervised Deep Learning for Fast and Effective White Matter Parcellation."](https://link.springer.com/chapter/10.1007/978-3-030-87234-2_47) International Conference on Medical Image Computing and Computer-Assisted Intervention. Springer, Cham, 2021.

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