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@TrinhLab

TrinhLab - University of Tennessee Knoxville

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  1. CASPER CASPER Public

    Enhanced guide-RNA Design and Targeting Analysis for Precise CRISPR Genome Editing of Single and Consortia of Industrially Relevant and Non-model Organisms

    Python 5 2

  2. CASPERpam CASPERpam Public

    Python code and source files used to identify and analyze PAM sequences for the complete NCBI spacerome

    Python 3 1

  3. CASPERapp CASPERapp Public

    Python 3 3

  4. ctherm-gem ctherm-gem Public

    HTML 2 2

  5. ModCell2 ModCell2 Public

    Modular cell strain design algorithms

    Jupyter Notebook 2 2

  6. compare-moea compare-moea Public

    Compare a variety of MOEA to solve the ModCell multiobjecitve strain desing problem

    MATLAB 2 2

Repositories

Showing 10 of 12 repositories
  • CASPERapp Public
    TrinhLab/CASPERapp’s past year of commit activity
    Python 3 BSL-1.0 3 1 4 Updated Jan 22, 2025
  • ctherm-gem Public
    TrinhLab/ctherm-gem’s past year of commit activity
    HTML 2 MIT 2 3 17 Updated Dec 8, 2022
  • GeCCo Public

    Gene expression classifier

    TrinhLab/GeCCo’s past year of commit activity
    Python 0 GPL-3.0 1 4 0 Updated Mar 14, 2022
  • Casper_Seq_Finder Public
    TrinhLab/Casper_Seq_Finder’s past year of commit activity
    C++ 0 0 0 0 Updated Feb 19, 2022
  • CASPER_OffTarget Public
    TrinhLab/CASPER_OffTarget’s past year of commit activity
    C++ 0 0 0 0 Updated Feb 18, 2022
  • CASPER Public

    Enhanced guide-RNA Design and Targeting Analysis for Precise CRISPR Genome Editing of Single and Consortia of Industrially Relevant and Non-model Organisms

    TrinhLab/CASPER’s past year of commit activity
    Python 5 GPL-3.0 2 2 0 Updated Feb 18, 2022
  • modcell-hpc-study Public

    Results and analysis with the modcell-hpc tool

    TrinhLab/modcell-hpc-study’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 26, 2021
  • modcell-hpc Public

    High-performance implementation of the ModCell multi-objective strain design tool

    TrinhLab/modcell-hpc’s past year of commit activity
    C 1 GPL-3.0 1 0 0 Updated Apr 22, 2020
  • ModCell2 Public

    Modular cell strain design algorithms

    TrinhLab/ModCell2’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 2 2 0 Updated Nov 4, 2019
  • github-views-monitor Public

    Monitor views of software distributed through Github

    TrinhLab/github-views-monitor’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Oct 11, 2019
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