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Merge pull request #104 from UMCUGenetics/hotfix/bump-picard-esitmate…
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…-library-complexity-resources

updated Picard estimate library complexity requirements
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fdekievit authored Aug 28, 2024
2 parents 61854b1 + a34149a commit c6b5bc5
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions WES.config
Original file line number Diff line number Diff line change
Expand Up @@ -350,9 +350,9 @@ process {

withLabel: PICARD_2_22_0_EstimateLibraryComplexity {
cpus = 2
memory = { 50.GB * task.attempt }
time = { (1.ms * bam_file.size() / 3000) * task.attempt }
clusterOptions = "$params.cluster_options --gres=tmpspace:60G"
memory = { 80.GB * task.attempt }
time = { (1.ms * bam_file.size() / 1500) * task.attempt }
clusterOptions = "$params.cluster_options --gres=tmpspace:100G"

publishDir {
path = "$params.outdir/QC/Picard"
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