Merge pull request #42 from schuettl/patch-1 #53

	name: R CI release

	on: [push, pull_request]

	jobs:
	build:
	runs-on: Ubuntu-latest
	strategy:
	matrix:
	include:
	- name: latest
	cntr: uscbiostats/slurmr:rcmdcheck

	steps:
	- uses: actions/checkout@v2

	- name: Setting up the environment
	run: docker pull ${{ matrix.cntr }}

	- name: Running the check
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
	run: \|
	cd docker
	make check

	# # COVERAGE FOR THE FUTURE (RIGHT NOW WE HAVE SSH PROBLEMS)
	# - name: Coverage
	# env:
	# CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
	# run: \|
	# cd docker
	# chmod 600 id_rsa
	# docker run \
	# -e GITHUB_ACTION=$GITHUB_ACTION \
	# -e GITHUB_REPOSITORY=$GITHUB_REPOSITORY \
	# -e GITHUB_REF=$GITHUB_REF \
	# -e GITHUB_HEAD_REF=$GITHUB_HEAD_REF \
	# -e GITHUB_RUN_ID=$GITHUB_RUN_ID \
	# -e GITHUB_SHA=$GITHUB_SHA \
	# -e CODECOV_TOKEN=$CODECOV_TOKEN --detach --publish 10022:22 \
	# -v$(PWD)/..:/home/xenon/slurmR -w/home/xenon uscbiostats/slurmr:interactive
	# echo "Waiting a few seconds..." & sleep 5 && \
	# ssh -p 10022 -i id_rsa UserKnownHostsFile=/github/home/.ssh/known_hosts \
	# xenon@localhost 'cd /home/slurmr-test/ && Rscript -e "covr::codecov(\"/home/xenon/slurmR\", quiet = FALSE)"'

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