fix post_germline_calls_case_mode

bihealth · Feb 23, 2024 · 1326f62 · 1326f62
1 parent 221ed8b
commit 1326f62
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/snappy_wrappers/wrappers/gcnv/post_germline_calls_case_mode/wrapper.py b/snappy_wrappers/wrappers/gcnv/post_germline_calls_case_mode/wrapper.py
@@ -29,8 +29,8 @@
     exit 1
 fi
 
-# Get contig name style
-tail -n +2 $(dirname {snakemake.input.ploidy})/ploidy-calls/SAMPLE_${{sample_index}}/contig_ploidy.tsv | grep "chr" > /dev/null && true
+# Get contig name style; SAMPLE_0  is guaranteed to exist
+tail -n +2 $(dirname {snakemake.input.ploidy})/ploidy-calls/SAMPLE_0/contig_ploidy.tsv | grep "chr" > /dev/null && true
 exit_status=$?
 if [[ $exit_status == 0 ]]; then
     STYLE="chr"