isort, black

snappy_pipeline/base.py

@@ -2,13 +2,13 @@
 """Basic utility code for snappy_pipeline
 """
 
-import os
-import sys
-import warnings
 from collections import OrderedDict
 from collections.abc import MutableMapping
 from copy import deepcopy
+import os
+import sys
 from typing import Any
+import warnings
 
 import ruamel.yaml as ruamel_yaml
 from snakemake.utils import validate
@@ -72,8 +72,9 @@ def expand_ref(config_path, dict_data, lookup_paths=None, dict_class=OrderedDict
 
 def validate_config(config: dict[Any, Any], workflow: str, file=sys.stderr):
     print(f"\nValidating config.yaml for {workflow}", file=file)
-    config_schema_path = os.path.join(os.path.dirname(snakefile_path(workflow)),
-                                      "config.schema.yaml")
+    config_schema_path = os.path.join(
+        os.path.dirname(snakefile_path(workflow)), "config.schema.yaml"
+    )
     validate(config, config_schema_path)
 
 

snappy_pipeline/workflows/adapter_trimming/__init__.py

@@ -142,8 +142,8 @@
 from biomedsheets.shortcuts import GenericSampleSheet
 from snakemake.io import expand
 
-from snappy_pipeline.utils import dictify, listify
 from snappy_pipeline.base import validate_config
+from snappy_pipeline.utils import dictify, listify
 from snappy_pipeline.workflows.abstract import (
     BaseStep,
     BaseStepPart,