fix: Wrapper crashing if dirs not clean

bihealth · Nov 12, 2023 · 9c7e1f1 · 9c7e1f1
1 parent 4874074
commit 9c7e1f1
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/snappy_wrappers/wrappers/gcnv/contig_ploidy/wrapper.py b/snappy_wrappers/wrappers/gcnv/contig_ploidy/wrapper.py
@@ -70,6 +70,8 @@
     path_name = sample_dir / "sample_name.txt"
     with path_name.open("rt") as inputf:
         sample_name = inputf.read().strip()
+    if sample_name not in sex_map:
+        continue
     sample_sex = sex_map[sample_name]
     path_call = sample_dir / "contig_ploidy.tsv"
     with path_call.open("rt") as inputf: