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feat: (#405) somatic variant qc #407

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feat: (#405) somatic variant qc #407

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ad07ebf
Adding wrapper for somatic variants QC
Jun 24, 2023
94cda27
Adding somatic variant qc pipeline
Jun 25, 2023
bd7b411
Update somatic_variant_checking
Jun 30, 2023
de36370
adding test for somatic_variant_checking
Jul 3, 2023
09d8088
format checking
Jul 3, 2023
73416b0
fixing format
Jul 3, 2023
c30f22e
Finalizing somatic variant checking
Jul 8, 2023
956904f
finalize somatic variants checking
Jul 8, 2023
4ce1159
Fix typo
Jul 8, 2023
1f5b0e0
fixing typo
Jul 8, 2023
e99ef3c
fixing small bugs
Jul 13, 2023
62b6e6f
fix: json format doesn't accept floats starting with .
ericblanc20 Jul 25, 2023
5d5246a
Finalizing somatic variant checking
Jul 27, 2023
64e7b61
Merge branch '405-somatic-variant-qc' of github.com:bihealth/snappy-p…
Jul 27, 2023
4750e75
update mantis enviroment
Jul 27, 2023
e9cb75b
finializing somatic_variant_checking
Aug 2, 2023
e9dbc5e
fixing vep environment
Aug 24, 2023
8d1d2c8
Merge branch 'main' into 405-somatic-variant-qc
giacuong171 Nov 14, 2023
70d5bb0
Merge branch '405-somatic-variant-qc' of github.com:bihealth/snappy-p…
Nov 20, 2023
fdbdfff
make isort happy
Nov 20, 2023
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make isort happy
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giacuong171 committed Nov 20, 2023
commit fdbdfff537b2d585d464219be4b7d8cf352f7ba1
1 change: 0 additions & 1 deletion snappy_pipeline/workflows/tumor_mutational_burden/__init__.py
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Expand Up @@ -12,7 +12,6 @@
ANNOTATION_TOOLS,
SomaticVariantAnnotationWorkflow,
)

from snappy_pipeline.workflows.somatic_variant_calling import (
SOMATIC_VARIANT_CALLERS_MATCHED,
SomaticVariantCallingWorkflow,
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