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chore: Replace mutect2_par wrapper with snakemake scattergather #538

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@tedil tedil commented Aug 2, 2024

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github-actions bot commented Aug 2, 2024

  • Please format your Python code with ruff: make fmt
  • Please check your Python code with ruff: make check
  • Please format your Snakemake code with snakefmt: make snakefmt

You can trigger all lints locally by running make lint

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coveralls commented Feb 6, 2025

Coverage Status

coverage: 85.707% (-0.1%) from 85.808%
when pulling 4154420 on scatter-gather
into f49fafb on main.

@tedil tedil requested a review from ericblanc20 February 7, 2025 14:11
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LGTM!

@tedil tedil marked this pull request as ready for review February 24, 2025 16:38
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tedil commented Feb 24, 2025

@ericblanc20 I have included your suggestions (and additionally removed the mutect2_par tests, since these are not relevant anymore)

@tedil tedil marked this pull request as draft February 24, 2025 16:53
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tedil commented Feb 24, 2025

TODO:

  • add scatter gather rules for panel preparation

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3 participants