Code

chore: update github CI#577

Code

Merged

tedil merged 18 commits intomainbihealth/snappy-pipeline:mainfrom fix-linting-in-cibihealth/snappy-pipeline:fix-linting-in-ciCopy head branch name to clipboardDec 11, 2024

+136-89

Commits

Commits on Dec 11, 2024

• chore: update github CI

  tedil

  committed
  8426062

• refactor conda env caching/creation to local action

  tedil

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  f2fba46

• give new WIP conda-based snakemake github-action a try

  tedil

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  5565f12

• move conda-cache action to correct folder

  tedil

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  34cede1

• fix indentation

  tedil

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  7b7d451

• use miniforge, don't adjust python version

  tedil

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  b72398f

• add default shell to action as well

  tedil

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  3b4bf1b

• include custom .condarc

  tedil

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  afe235a

• custom env name, re-enable python version stuff

  tedil

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  c5388e6

• fix env-name input

  tedil

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  3aec3be

• don't use miniforge/mamba, use conda

  tedil

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  95dae59

• only update when there's no cache hit

  tedil

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  b8d134a

• explicitly add shell

  tedil

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  aa11339

• ?

  tedil

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  84eac13

• include python version again

  tedil

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  6c563b9

• cache envs, not pkgsdirs

  tedil

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  7ef19e6

• add zlib again

  tedil

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  a3983fd

• update snappy.yaml in test workflow

  tedil

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  4deaf7f