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19 Open 33 Closed
19 Open 33 Closed
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Issues list

Tracker: FlatGFA benchmarks
#185 opened May 18, 2024 by sampsyo
2 of 15 tasks
Tracker: FlatGFA data structure optimization
#184 opened May 18, 2024 by sampsyo
3 of 9 tasks
Tracker: FlatGFA Python bindings
#179 opened May 14, 2024 by sampsyo
8 of 10 tasks
1
Divesting from odgi's Python bindings: documentation
#148 opened Nov 6, 2023 by anshumanmohan
Divesting from odgi's Python bindings: testing
#147 opened Nov 6, 2023 by anshumanmohan
Beyond .og: a zoo of data representations feature New feature, or a meaningful extension to an existing feature juicy More interesting than a chore, yet well-defined enough to be completed without getting too lost
#146 opened Nov 4, 2023 by anshumanmohan
@anshumanmohan
1
Currently unparseable parts of Pollen programs
#135 opened Aug 1, 2023 by priyasrikumar
8 tasks
3
Uniform test strategy: drop symlinks, use a long turnt file
#130 opened Jul 20, 2023 by anshumanmohan
Dangling file process.py? bug Something isn't working
#128 opened Jul 19, 2023 by anshumanmohan
@susan-garry
mygfa doesn't parse optional CIGAR strings triage required Ideas that need further discussion, whether asynchronous or synchronous, before we can take action
#124 opened Jul 17, 2023 by susan-garry
3
calyx_depth.py: divest from odgi's Python bindings feature New feature, or a meaningful extension to an existing feature
#107 opened Jun 19, 2023 by anshumanmohan
1 of 3 tasks
1
calyx_depth.py: lighten notation by using Calyx eDSL feature New feature, or a meaningful extension to an existing feature juicy More interesting than a chore, yet well-defined enough to be completed without getting too lost
#106 opened Jun 19, 2023 by anshumanmohan
calyx_depth.py: use the eDSL, stop using odgi's Python bindings feature New feature, or a meaningful extension to an existing feature
#105 opened Jun 19, 2023 by anshumanmohan
2 tasks
4
pollen_data_gen: go all the way to binary? feature New feature, or a meaningful extension to an existing feature
#104 opened Jun 10, 2023 by anshumanmohan
@anshumanmohan
slow-odgi: extract feature New feature, or a meaningful extension to an existing feature juicy More interesting than a chore, yet well-defined enough to be completed without getting too lost
#100 opened May 31, 2023 by anshumanmohan slow odgi 0.2
@anshumanmohan
Proofs about our commands feature New feature, or a meaningful extension to an existing feature
#85 opened May 8, 2023 by anshumanmohan
@anshumanmohan
1
odgi source confusion
#74 opened Apr 27, 2023 by anshumanmohan slow odgi 0.2
@anshumanmohan
2
slow-odgi: better benchmarking feature New feature, or a meaningful extension to an existing feature
#72 opened Apr 26, 2023 by anshumanmohan
1 of 4 tasks
slow odgi 0.2
@anshumanmohan
slow-odgi 0.n feature New feature, or a meaningful extension to an existing feature
#46 opened Apr 12, 2023 by anshumanmohan
5 of 11 tasks
@anshumanmohan
ProTip! Follow long discussions with comments:>50.