Skip to content

Commit

Permalink
add table for the different antibodies
Browse files Browse the repository at this point in the history
  • Loading branch information
Brendan Larsen committed Feb 14, 2024
1 parent 046b3af commit a9d66bf
Show file tree
Hide file tree
Showing 48 changed files with 873 additions and 818 deletions.
7 changes: 7 additions & 0 deletions data/custom_analyses_data/antibody_table.csv
Original file line number Diff line number Diff line change
@@ -0,0 +1,7 @@
Antibody,IC50 (ng/mL),Epitope
m102.4,12.3,Receptor Face
HENV-26,13.7,Receptor Face
HENV-117,11.7,Receptor Face
HENV-103,66.7,Dimerization
HENV-32,143,Dimerization
nAH1.3,23.1,Distal Head
2 changes: 1 addition & 1 deletion docs/htmls/E2_E3_correlation.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/E2_E3_correlation_site.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/E2_E3_entry_all_muts_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/E2_E3_entry_corr_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/E2_binding_heatmap.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/E2_entry_heatmap.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/E3_binding_heatmap.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/E3_entry_heatmap.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/aggregate_mab_and_binding.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/aggregate_mab_and_niv_polymorphism.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/binding_by_site_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/binding_corr_heatmap.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/binding_region_boxplot_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/binding_region_bubble_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/binding_vs_escape.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/combined_E2_E3_correlation_plots.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/combined_E2_E3_site_corr.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/combined_contact_binding_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/combined_entry_contact_heatmaps.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/contact_type_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/effect_binding_escape.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/entry_binding_combined_corr_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/entry_binding_combined_corr_plot_agg.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/entry_binding_corr_heatmap.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/entry_region_boxplot_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/escape_bubble_1_mut_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/escape_bubble_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/mab_line_escape_plot.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/mab_plot_all.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/mab_plot_top.html

Large diffs are not rendered by default.

2 changes: 1 addition & 1 deletion docs/htmls/max_binding_in_contact.html
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@
<div id="vis"></div>
<script>
(function(vegaEmbed) {
var spec = {"width": 200, "height": 200, "config": {"background": "transparent", "title": {"fontSize": 18, "font": "Helvetica", "anchor": "start", "color": "#000000", "orient": "top", "offset": 0}, "axisX": {"domain": true, "domainColor": "#000000", "domainWidth": 0.75, "grid": false, "gridColor": "#DEDDDD", "gridWidth": 0.5, "labelFont": "Helvetica", "labelFontSize": 12, "labelAngle": 0, "tickColor": "#000000", "tickSize": 4, "titleFont": "Helvetica", "tickCount": 3, "titleFontSize": 12, "titlePadding": 10}, "axisY": {"domain": true, "domainColor": "#000000", "domainWidth": 0.75, "grid": false, "gridColor": "#DEDDDD", "gridWidth": 0.5, "labelFont": "Helvetica", "labelFontSize": 12, "labelAngle": 0, "tickColor": "#000000", "tickSize": 4, "tickCount": 3, "titleFont": "Helvetica", "titleFontSize": 12, "titlePadding": 10, "titleAngle": 270}, "legend": {"labelFont": "Helvetica", "labelFontSize": 12, "symbolSize": 100, "titleFont": "Helvetica", "titleFontSize": 12, "padding": 5, "titleLimit": 200, "gradientLength": 100}, "range": {"category": ["#1f4e79", "#ff7f0e", "#2ca02c", "#d62728", "#9467bd", "#8c564b", "#e377c2", "#7f7f7f", "#bcbd22", "#17becf"], "diverging": ["#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494"]}, "view": {"stroke": "transparent"}, "point": {"filled": true, "size": 25, "opacity": 1, "color": "black"}, "boxplot": {"extent": "min-max"}}, "vconcat": [{"data": {"name": "data-dd7bfc0ffb83d639b2667240b173ee67"}, "mark": {"type": "point", "size": 100}, "encoding": {"color": {"condition": {"param": "param_6", "value": "orange", "empty": false}, "value": "black"}, "strokeWidth": {"condition": {"param": "param_6", "value": 2, "empty": false}, "value": 0}, "tooltip": [{"field": "site", "type": "quantitative"}], "x": {"axis": {"grid": true, "labelAngle": -90}, "field": "site", "scale": {"domain": [239.0, 240.0, 241.0, 242.0, 305.0, 388.0, 389.0, 401.0, 402.0, 458.0, 488.0, 490.0, 491.0, 492.0, 501.0, 504.0, 505.0, 506.0, 507.0, 530.0, 531.0, 532.0, 533.0, 555.0, 557.0, 558.0, 559.0, 579.0, 580.0, 581.0, 583.0, 588.0]}, "sort": [239.0, 240.0, 241.0, 242.0, 305.0, 388.0, 389.0, 401.0, 402.0, 458.0, 488.0, 490.0, 491.0, 492.0, 501.0, 504.0, 505.0, 506.0, 507.0, 530.0, 531.0, 532.0, 533.0, 555.0, 557.0, 558.0, 559.0, 579.0, 580.0, 581.0, 583.0, 588.0], "title": "Site", "type": "ordinal"}, "y": {"axis": {"grid": true}, "field": "binding_median", "title": "EFNB2", "type": "quantitative"}}, "name": "view_7"}, {"data": {"name": "data-785a32d1e731a8627ac50094d4464038"}, "mark": {"type": "point", "size": 100}, "encoding": {"color": {"condition": {"param": "param_6", "value": "orange", "empty": false}, "value": "black"}, "strokeWidth": {"condition": {"param": "param_6", "value": 2, "empty": false}, "value": 0}, "tooltip": [{"field": "site", "type": "quantitative"}], "x": {"axis": {"grid": true, "labelAngle": -90}, "field": "site", "scale": {"domain": [239.0, 240.0, 241.0, 242.0, 305.0, 388.0, 389.0, 401.0, 402.0, 458.0, 488.0, 490.0, 491.0, 492.0, 501.0, 504.0, 505.0, 506.0, 507.0, 530.0, 531.0, 532.0, 533.0, 555.0, 557.0, 558.0, 559.0, 579.0, 580.0, 581.0, 583.0, 588.0]}, "sort": [239.0, 240.0, 241.0, 242.0, 305.0, 388.0, 389.0, 401.0, 402.0, 458.0, 488.0, 490.0, 491.0, 492.0, 501.0, 504.0, 505.0, 506.0, 507.0, 530.0, 531.0, 532.0, 533.0, 555.0, 557.0, 558.0, 559.0, 579.0, 580.0, 581.0, 583.0, 588.0], "title": "Site", "type": "ordinal"}, "y": {"axis": {"grid": true}, "field": "binding_median", "title": "EFNB3", "type": "quantitative"}}, "name": "view_8"}], "params": [{"name": "param_6", "select": {"type": "point", "fields": ["site"], "nearest": true, "on": "mouseover"}, "value": 0, "views": ["view_7", "view_8"]}], "spacing": 1, "title": "Max Binding in Contact", "$schema": "https://vega.github.io/schema/vega-lite/v5.15.1.json", "datasets": {"data-dd7bfc0ffb83d639b2667240b173ee67": [{"site": 239, "binding_median": -0.241}, {"site": 240, "binding_median": -3.435}, {"site": 241, "binding_median": 1.123}, {"site": 242, "binding_median": -0.434}, {"site": 305, "binding_median": 1.284}, {"site": 388, "binding_median": 0.652}, {"site": 389, "binding_median": -0.878}, {"site": 401, "binding_median": 0.413}, {"site": 402, "binding_median": -0.046}, {"site": 458, "binding_median": 1.138}, {"site": 488, "binding_median": -0.014}, {"site": 490, "binding_median": -0.949}, {"site": 491, "binding_median": -0.905}, {"site": 492, "binding_median": 0.384}, {"site": 501, "binding_median": -1.502}, {"site": 504, "binding_median": -3.04}, {"site": 505, "binding_median": -2.868}, {"site": 506, "binding_median": 0.651}, {"site": 507, "binding_median": 0.822}, {"site": 530, "binding_median": 0.58}, {"site": 531, "binding_median": -2.294}, {"site": 532, "binding_median": -2.44}, {"site": 533, "binding_median": -3.433}, {"site": 555, "binding_median": 0.191}, {"site": 557, "binding_median": -2.669}, {"site": 558, "binding_median": -0.058}, {"site": 559, "binding_median": 1.199}, {"site": 579, "binding_median": -1.692}, {"site": 580, "binding_median": 2.19}, {"site": 581, "binding_median": -2.27}, {"site": 583, "binding_median": 0.19}, {"site": 588, "binding_median": -2.019}], "data-785a32d1e731a8627ac50094d4464038": [{"site": 239, "binding_median": -0.018}, {"site": 241, "binding_median": 0.515}, {"site": 242, "binding_median": 0.114}, {"site": 305, "binding_median": 0.701}, {"site": 388, "binding_median": 0.288}, {"site": 389, "binding_median": -0.639}, {"site": 401, "binding_median": 0.133}, {"site": 402, "binding_median": 0.307}, {"site": 458, "binding_median": 0.713}, {"site": 488, "binding_median": -0.17}, {"site": 490, "binding_median": 0.146}, {"site": 491, "binding_median": 0.604}, {"site": 492, "binding_median": 1.2}, {"site": 501, "binding_median": -0.639}, {"site": 505, "binding_median": -0.666}, {"site": 507, "binding_median": 0.195}, {"site": 530, "binding_median": 0.306}, {"site": 531, "binding_median": -0.641}, {"site": 532, "binding_median": -0.053}, {"site": 555, "binding_median": 0.453}, {"site": 558, "binding_median": 0.036}, {"site": 559, "binding_median": 0.272}, {"site": 580, "binding_median": 1.361}, {"site": 583, "binding_median": 0.137}, {"site": 588, "binding_median": 1.052}]}};
var spec = {"width": 200, "height": 200, "config": {"background": "transparent", "title": {"fontSize": 18, "font": "Helvetica", "anchor": "start", "color": "#000000", "orient": "top", "offset": 0}, "axisX": {"domain": true, "domainColor": "#000000", "domainWidth": 0.75, "grid": false, "gridColor": "#DEDDDD", "gridWidth": 0.5, "labelFont": "Helvetica", "labelFontSize": 12, "labelAngle": 0, "tickColor": "#000000", "tickSize": 4, "titleFont": "Helvetica", "tickCount": 3, "titleFontSize": 12, "titlePadding": 10}, "axisY": {"domain": true, "domainColor": "#000000", "domainWidth": 0.75, "grid": false, "gridColor": "#DEDDDD", "gridWidth": 0.5, "labelFont": "Helvetica", "labelFontSize": 12, "labelAngle": 0, "tickColor": "#000000", "tickSize": 4, "tickCount": 3, "titleFont": "Helvetica", "titleFontSize": 12, "titlePadding": 10, "titleAngle": 270}, "legend": {"labelFont": "Helvetica", "labelFontSize": 12, "symbolSize": 100, "titleFont": "Helvetica", "titleFontSize": 12, "padding": 5, "titleLimit": 200, "gradientLength": 100}, "range": {"category": ["#1f4e79", "#ff7f0e", "#2ca02c", "#d62728", "#9467bd", "#8c564b", "#e377c2", "#7f7f7f", "#bcbd22", "#17becf"], "diverging": ["#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494"]}, "view": {"stroke": "transparent"}, "point": {"filled": true, "size": 25, "opacity": 1, "color": "black"}, "boxplot": {"extent": "min-max"}}, "vconcat": [{"data": {"name": "data-0c76a138a8e7251847133d1906c73c81"}, "mark": {"type": "point", "size": 100}, "encoding": {"color": {"condition": {"param": "param_6", "value": "orange", "empty": false}, "value": "black"}, "strokeWidth": {"condition": {"param": "param_6", "value": 2, "empty": false}, "value": 0}, "tooltip": [{"field": "site", "type": "quantitative"}], "x": {"axis": {"grid": true, "labelAngle": -90}, "field": "site", "scale": {"domain": [218.0, 238.0, 239.0, 241.0, 242.0, 305.0, 388.0, 389.0, 401.0, 402.0, 458.0, 488.0, 490.0, 491.0, 492.0, 501.0, 504.0, 505.0, 506.0, 507.0, 530.0, 531.0, 532.0, 533.0, 554.0, 555.0, 556.0, 557.0, 558.0, 559.0, 579.0, 580.0, 581.0, 583.0, 588.0]}, "sort": [218.0, 238.0, 239.0, 241.0, 242.0, 305.0, 388.0, 389.0, 401.0, 402.0, 458.0, 488.0, 490.0, 491.0, 492.0, 501.0, 504.0, 505.0, 506.0, 507.0, 530.0, 531.0, 532.0, 533.0, 554.0, 555.0, 556.0, 557.0, 558.0, 559.0, 579.0, 580.0, 581.0, 583.0, 588.0], "title": "Site", "type": "ordinal"}, "y": {"axis": {"grid": true}, "field": "binding_median", "title": "EFNB2", "type": "quantitative"}}, "name": "view_7"}, {"data": {"name": "data-c172ff1e967f988049837ddfa034dec3"}, "mark": {"type": "point", "size": 100}, "encoding": {"color": {"condition": {"param": "param_6", "value": "orange", "empty": false}, "value": "black"}, "strokeWidth": {"condition": {"param": "param_6", "value": 2, "empty": false}, "value": 0}, "tooltip": [{"field": "site", "type": "quantitative"}], "x": {"axis": {"grid": true, "labelAngle": -90}, "field": "site", "scale": {"domain": [218.0, 238.0, 239.0, 241.0, 242.0, 305.0, 388.0, 389.0, 401.0, 402.0, 458.0, 488.0, 490.0, 491.0, 492.0, 501.0, 504.0, 505.0, 506.0, 507.0, 530.0, 531.0, 532.0, 533.0, 554.0, 555.0, 556.0, 557.0, 558.0, 559.0, 579.0, 580.0, 581.0, 583.0, 588.0]}, "sort": [218.0, 238.0, 239.0, 241.0, 242.0, 305.0, 388.0, 389.0, 401.0, 402.0, 458.0, 488.0, 490.0, 491.0, 492.0, 501.0, 504.0, 505.0, 506.0, 507.0, 530.0, 531.0, 532.0, 533.0, 554.0, 555.0, 556.0, 557.0, 558.0, 559.0, 579.0, 580.0, 581.0, 583.0, 588.0], "title": "Site", "type": "ordinal"}, "y": {"axis": {"grid": true}, "field": "binding_median", "title": "EFNB3", "type": "quantitative"}}, "name": "view_8"}], "params": [{"name": "param_6", "select": {"type": "point", "fields": ["site"], "nearest": true, "on": "mouseover"}, "value": 0, "views": ["view_7", "view_8"]}], "spacing": 1, "title": "Max Binding in Contact", "$schema": "https://vega.github.io/schema/vega-lite/v5.15.1.json", "datasets": {"data-0c76a138a8e7251847133d1906c73c81": [{"site": 218, "binding_median": -0.018}, {"site": 238, "binding_median": -0.496}, {"site": 239, "binding_median": -0.241}, {"site": 241, "binding_median": 1.123}, {"site": 242, "binding_median": -0.434}, {"site": 305, "binding_median": 1.284}, {"site": 388, "binding_median": 0.652}, {"site": 389, "binding_median": -0.878}, {"site": 401, "binding_median": 0.413}, {"site": 402, "binding_median": -0.046}, {"site": 458, "binding_median": 1.138}, {"site": 488, "binding_median": -0.745}, {"site": 490, "binding_median": -0.949}, {"site": 491, "binding_median": -0.905}, {"site": 492, "binding_median": 0.384}, {"site": 501, "binding_median": -1.502}, {"site": 504, "binding_median": -3.04}, {"site": 505, "binding_median": -2.868}, {"site": 506, "binding_median": 0.651}, {"site": 507, "binding_median": 0.822}, {"site": 530, "binding_median": 0.58}, {"site": 531, "binding_median": -2.294}, {"site": 532, "binding_median": -2.44}, {"site": 533, "binding_median": -3.433}, {"site": 554, "binding_median": 0.501}, {"site": 555, "binding_median": 0.191}, {"site": 556, "binding_median": 0.519}, {"site": 557, "binding_median": -3.381}, {"site": 558, "binding_median": -0.058}, {"site": 559, "binding_median": 1.199}, {"site": 579, "binding_median": -1.692}, {"site": 580, "binding_median": 2.19}, {"site": 581, "binding_median": -2.27}, {"site": 583, "binding_median": 0.19}, {"site": 588, "binding_median": -2.019}], "data-c172ff1e967f988049837ddfa034dec3": [{"site": 218, "binding_median": 0.05}, {"site": 238, "binding_median": -0.011}, {"site": 239, "binding_median": -0.018}, {"site": 241, "binding_median": 0.515}, {"site": 242, "binding_median": 0.114}, {"site": 305, "binding_median": 0.701}, {"site": 388, "binding_median": 0.288}, {"site": 389, "binding_median": -0.639}, {"site": 401, "binding_median": 0.133}, {"site": 402, "binding_median": 0.307}, {"site": 458, "binding_median": 0.713}, {"site": 488, "binding_median": -0.644}, {"site": 490, "binding_median": 0.146}, {"site": 491, "binding_median": 0.604}, {"site": 492, "binding_median": 1.2}, {"site": 501, "binding_median": -0.639}, {"site": 507, "binding_median": 0.195}, {"site": 530, "binding_median": 0.306}, {"site": 531, "binding_median": -0.641}, {"site": 532, "binding_median": -0.631}, {"site": 554, "binding_median": 0.028}, {"site": 555, "binding_median": 0.453}, {"site": 556, "binding_median": 0.417}, {"site": 558, "binding_median": 0.036}, {"site": 559, "binding_median": 0.272}, {"site": 580, "binding_median": 1.361}, {"site": 583, "binding_median": 0.137}, {"site": 588, "binding_median": 1.052}]}};
var embedOpt = {"mode": "vega-lite"};

function showError(el, error){
Expand Down
Loading

0 comments on commit a9d66bf

Please sign in to comment.