add citation to _bioRxiv_ preprint

dms-vep · Jan 21, 2025 · ead2d6c · ead2d6c
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diff --git a/README.md b/README.md
@@ -1,5 +1,6 @@
 # Deep mutational scanning of SARS-CoV-2 XBB.1.5 spike to map escape from primary infection infants
 Study by Bernadeta Dadonaite and Jesse Bloom in collaboration with Mary Staat's group.
+See [Dadonaite et al (2025)](https://www.biorxiv.org/content/10.1101/2025.01.17.633612v1) for details on the study.
 
 This repo contains the data and code for pseudovirus deep mutational scanning of XBB.1.5 spike with respect to escape from sera from infants first exposed to XBB variants.
 The library used here and some of the comparator adult data are from the previously published study [Dadonaite et al (2024)](https://www.nature.com/articles/s41586-024-07636-1).

diff --git a/config.yaml b/config.yaml
@@ -28,9 +28,9 @@ github_repo_url: https://github.com/dms-vep/SARS-CoV-2_XBB.1.5_spike_DMS_infant_
 # and should not be needed for other pipelines.
 github_blob_url: https://github.com/dms-vep/SARS-CoV-2_XBB.1.5_spike_DMS_infant_sera/blob/main
 # Some descriptions and metadata about the analysis.
-description: Deep mutational scanning of SARS-CoV-2 XBB.1.5 spike and primary sera response mapping
+description: SARS-CoV-2 neutralizing antibody specificities differ dramatically between recently infected infants and immune-imprinted individuals
 year: 2025
-authors: Bernadeta Dadonaite and Jesse Bloom
+authors: "[Dadonaite et al](https://www.biorxiv.org/content/10.1101/2025.01.17.633612v1)"
 
 # ----------------------------------------------------------------------------
 # Site numbering, mutation classification, and neut standards

diff --git a/docs/htmls/sera-3990519_mut_effect.html b/docs/htmls/sera-3990519_mut_effect.html
diff --git a/docs/htmls/sera-3990519_mut_icXX.html b/docs/htmls/sera-3990519_mut_icXX.html
diff --git a/docs/htmls/sera-4002223_mut_effect.html b/docs/htmls/sera-4002223_mut_effect.html
diff --git a/docs/htmls/sera-4002223_mut_icXX.html b/docs/htmls/sera-4002223_mut_icXX.html
diff --git a/docs/htmls/sera-child-1-born2020_mut_effect.html b/docs/htmls/sera-child-1-born2020_mut_effect.html
diff --git a/docs/htmls/sera-child-1-born2020_mut_icXX.html b/docs/htmls/sera-child-1-born2020_mut_icXX.html
diff --git a/docs/htmls/sera-infant-1-born2022_exposure1_mut_effect.html b/docs/htmls/sera-infant-1-born2022_exposure1_mut_effect.html
diff --git a/docs/htmls/sera-infant-1-born2022_exposure1_mut_icXX.html b/docs/htmls/sera-infant-1-born2022_exposure1_mut_icXX.html
diff --git a/docs/htmls/sera-infant-4-born2022_exposure1_mut_effect.html b/docs/htmls/sera-infant-4-born2022_exposure1_mut_effect.html
diff --git a/docs/htmls/sera-infant-4-born2022_exposure1_mut_icXX.html b/docs/htmls/sera-infant-4-born2022_exposure1_mut_icXX.html
diff --git a/docs/htmls/sera-infant-5-born2022_exposure1_mut_effect.html b/docs/htmls/sera-infant-5-born2022_exposure1_mut_effect.html
diff --git a/docs/htmls/sera-infant-5-born2022_exposure1_mut_icXX.html b/docs/htmls/sera-infant-5-born2022_exposure1_mut_icXX.html
diff --git a/docs/htmls/sera-infant-5-born2022_exposure2_mut_effect.html b/docs/htmls/sera-infant-5-born2022_exposure2_mut_effect.html
diff --git a/docs/htmls/sera-infant-5-born2022_exposure2_mut_icXX.html b/docs/htmls/sera-infant-5-born2022_exposure2_mut_icXX.html
diff --git a/docs/index.html b/docs/index.html
@@ -1,5 +1,5 @@
-<h1 id="deep-mutational-scanning-of-sars-cov-2-xbb15-spike-and-primary-sera-response-mapping">Deep mutational scanning of SARS-CoV-2 XBB.1.5 spike and primary sera response mapping</h1>
-<p>Analysis by Bernadeta Dadonaite and Jesse Bloom (2025)</p>
+<h1 id="sars-cov-2-neutralizing-antibody-specificities-differ-dramatically-between-recently-infected-infants-and-immune-imprinted-individuals">SARS-CoV-2 neutralizing antibody specificities differ dramatically between recently infected infants and immune-imprinted individuals</h1>
+<p>Analysis by <a href="https://www.biorxiv.org/content/10.1101/2025.01.17.633612v1">Dadonaite et al</a> (2025)</p>
 <p>See <a href="https://github.com/dms-vep/SARS-CoV-2_XBB.1.5_spike_DMS_infant_sera">https://github.com/dms-vep/SARS-CoV-2_XBB.1.5_spike_DMS_infant_sera</a> for full code.</p>
 <div class="toc"><span class="toctitle">Contents</span><ul>
 <li><a href="#barcode-to-codon-variant-lookup-table">Barcode to codon-variant lookup table</a></li>

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