feat: add pindel artifact annotation and filter #71
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| @@ -21,6 +21,16 @@ properties: | |||
| Path to resources.yaml file | |||
| format: uri-reference | |||
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| pacbio_alignment: | |||
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Is this and ont_alignment related to the artifact filter?
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Yes and no. With the artifact filter i needed to update the cnv_sv module, and in the new version there are some rules for long-read added and by that a new format possible format for the units file. The pacbio_alignment and ont_alignment are used to separate a short-read from a long-read units.tsv.
Jonas and Padraic are working on a solution where Hydra can figure out what type of sequencing are used by itself. But for now its the _alignment variables that determines which columns should be used, so I set those to False by default for Poppy since it is designed for short-read.
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Haha no worries, don't forget to have actual vacation as well! 🌴 😎 |
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