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36 Open 62 Closed
36 Open 62 Closed
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Issues list

Regtools junction extract: strandness detection malfunction
#197 opened Oct 22, 2024 by santataRU
Issues with Regtools Statistical Analysis Workflow
#190 opened Sep 16, 2024 by mguaita
feat: Allow read filtering based on mapping quality to junctions extract
#189 opened Jul 3, 2024 by yfarjoun
1
Bug: min_intron_length_ accidentally initialized from anchor (not intron) length parameter
#188 opened Jul 1, 2024 by TimD1
1
bug report: junction extract tool should not count overlapping reads as double support for a junction
#187 opened Jun 26, 2024 by yfarjoun
1
Feature request: add per-read anchor requirement to junction extract tool
#186 opened Jun 26, 2024 by yfarjoun
1
Unrecognized strandness argument!
#185 opened May 11, 2024 by hsymoon
1
KeyError: 'score' problem
#184 opened Apr 10, 2024 by CuteGold0407
Feature request
#183 opened Mar 19, 2024 by Mohamed-HAMICI
1
1
Question about single cell regtools junctions extract.
#182 opened Mar 13, 2024 by xiaohe0404
Splice junctions are delayed by one position at the 5' side
#181 opened Dec 7, 2023 by bkffadia
Building error
#180 opened Dec 6, 2023 by aravindpad
2
Test data for regtools cannot be found!
#179 opened Oct 24, 2023 by Eteleeb
Questions about compare_junctions_hist_v2.R
#178 opened Aug 3, 2023 by R-Najjar
3
installation problem
#176 opened May 15, 2023 by smurph50
3
4
Multiple input BAM
#172 opened Jan 25, 2023 by alexcorm
invalid strand values after running junctions extract
#166 opened Aug 16, 2022 by Vishvak2000
1
Junction extract: different junction start/end sites detected using short and long reads
#165 opened Jul 20, 2022 by ErminZ
1
Comments/problems noticed while getting Example workflow to run
#153 opened Oct 13, 2021 by toddajohnson
1
Example workflow mentions variants.sh, but it could not be found
#151 opened Oct 12, 2021 by toddajohnson
3
Junction annotation questions
#149 opened Aug 3, 2021 by yanwang271
2
carry over nucleotide change
#142 opened Apr 29, 2021 by yang-yangfeng
@yang-yangfeng
junctions extract producing blank file (no output)
#139 opened Oct 20, 2020 by andreismol
9
allow user to set splicing window differently based on acceptor/donor end enhancement
#135 opened Jan 23, 2020 by yang-yangfeng
1
Add option to report window (-w) that was used to consider each variant
#124 opened Oct 30, 2019 by kcotto
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