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Derek furst/update derived queries #559

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merged 6 commits into from
Oct 31, 2023

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DerekFurstPitt
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Changed dataset_is_primary to use creation_action to determine whether a dataset is primary rather than inspecting its distance from the nearest sample ancestor

yuanzhou and others added 6 commits October 23, 2023 11:14
…mponents-datasets

Derek furst/multiple components datasets
…dexCollectionSupport

Karlburke/search api reindex collection support
…sample

ancestor to determine whether it was primary or processed to instead rely
on the creation_action property of its activity ancestor. Fixed misc
instances of <-()-[]<-() throughout
…sample

ancestor to determine whether it was primary or processed to instead rely
on the creation_action property of its activity ancestor. Fixed misc
instances of -()-[]<-() throughout
@yuanzhou
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@DerekFurstPitt The query updates handle the "Central Process" and "Lab Process" Activity types. Do we need to exclude the "Multi-Assay Split" type as well for those component datasets?

@DerekFurstPitt
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@DerekFurstPitt The query updates handle the "Central Process" and "Lab Process" Activity types. Do we need to exclude the "Multi-Assay Split" type as well for those component datasets?

I am uncertain. Issue 534 only says lab process and central process, and the example query bill included specifically uses the "ends with process" bit

@yuanzhou
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From Bill:

The result of a “Multi-Assay Split” dataset isn’t a derived/processed dataset so should not be included in this task.

src/app_neo4j_queries.py Show resolved Hide resolved
@yuanzhou yuanzhou merged commit df5fd75 into dev-integrate Oct 31, 2023
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@yuanzhou yuanzhou deleted the Derek-Furst/update-derived-queries branch November 8, 2023 15:44
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2 participants