Remove static yamls parsing and use UBKG calls

VERSION

@@ -1 +1 @@
-2.1.38
+2.1.39

entity-api-spec.yaml

@@ -406,59 +406,6 @@ components:
             - section
             - suspension
           description: "A code representing the type of specimen. Must be an organ, block, section, or suspension"
-        specimen_type:
-          type: string
-          enum:
-            - atacseq
-            - biopsy
-            - blood
-            - cell_lysate
-            - clarity_hydrogel
-            - codex
-            - cryosections_curls_from_fresh_frozen_oct
-            - cryosections_curls_rnalater
-            - ffpe_block
-            - ffpe_slide
-            - fixed_frozen_section_slide
-            - fixed_tissue_piece
-            - flash_frozen_liquid_nitrogen
-            - formalin_fixed_oct_block
-            - fresh_frozen_oct_block
-            - fresh_frozen_section_slide
-            - fresh_frozen_tissue
-            - fresh_frozen_tissue_section
-            - fresh_tissue
-            - frozen_cell_pellet_buffy_coat
-            - gdna
-            - module
-            - nuclei
-            - nuclei_rnalater
-            - organ
-            - organ_piece
-            - other
-            - pbmc
-            - pfa_fixed_frozen_oct_block
-            - plasma
-            - protein
-            - ran_poly_a_enriched
-            - rna_total
-            - rnalater_treated_and_stored
-            - rnaseq
-            - scatacseq
-            - scrnaseq
-            - segment
-            - seqfish
-            - sequence_library
-            - serum
-            - single_cell_cryopreserved
-            - snatacseq
-            - snrnaseq
-            - tissue_lysate
-            - wgs
-          description: "DEPRECATED:  No longer a required field. A code representing the type of specimen.  Must be one of the codes specified in: [tissue sample types](https://github.com/hubmapconsortium/search-api/blob/main/src/search-schema/data/definitions/enums/tissue_sample_types.yaml)"
-        specimen_type_other:
-          type: string
-          description: "The user provided sample type if the 'other' sample_type is chosen."
         protocol_url:
           type: string
           description: "The protocols.io doi url pointing the protocol under wich the sample was obtained and/or prepared."
@@ -1874,6 +1821,49 @@ paths:
           description: The target dataset could not be found
         '500':
           description: Internal error
+  '/datasets/{id}/multi-revisions':
+    get:
+      summary: 'Retrieve a list of all multi revisions of a dataset from the id of any dataset in the chain. E.g: If there are 5 revisions, and the id for revision 4 is given, a list of revisions 1-5 will be returned in reverse order (newest first). Non-public access is only required to retrieve information on non-published datasets. Output will be a list of dictionaries. Each dictionary contains the dataset revision number and its list of uuids. Optionally, the full dataset can be included for each.'
+      parameters:
+        - name: id
+          in: path
+          description: The unique identifier of entity.  This identifier can be either an HuBMAP ID (e.g. HBM123.ABCD.456) or UUID
+          required: true
+          schema:
+            type: string
+        - name: include_dataset
+          in: query
+          description: A case insensitive string. Any value besides true will have no effect. If the string is 'true', the full dataset for each revision will be included in the response
+          required: false
+          schema:
+            type: string
+            enum: ['true', 'false']
+      responses:
+        '200':
+          description: The list of revised datasets that the referenced dataset is a member of including the index number of the revision, where 1 is the oldest version of any revision chain
+          content:
+            application/json:
+              schema:
+                type: object
+                properties:
+                  uuid:
+                    type: string
+                    description: The uuid of a dataset
+                  revision_number:
+                    type: integer
+                    description: The number in the revision chain of this dataset where 1 is the oldest revision
+                  dataset:
+                    $ref: '#/components/schemas/Dataset'
+        '400':
+          description: Invalid or misformatted entity identifier, or the given entity is not a Dataset
+        '401':
+          description: The user's token has expired or the user did not supply a valid token
+        '403':
+          description: The user is not authorized to query the revision number of the given dataset.
+        '404':
+          description: The target dataset could not be found
+        '500':
+          description: Internal error
   '/datasets/{id}/revisions':
     get:
       summary: 'From a given ID of a versioned dataset, retrieve a list of every dataset in the chain ordered from most recent to oldest. The revision number, as well as the dataset uuid will be included. An optional parameter ?include_dataset=true will include the full dataset for each revision as well. Public/Consortium access rules apply, if is for a non-public dataset and no token or a token without membership in HuBMAP-Read group is sent with the request then a 403 response should be returned. If the given id is published, but later revisions are not and the user is not in HuBMAP-Read group, only published revisions will be returned. The field next_revision_uuid will not be returned if the next revision is unpublished'
@@ -1890,7 +1880,7 @@ paths:
           required: false
           schema:
             type: string
-            enum: ['true', 'false']
+            enum: [ 'true', 'false' ]
       responses:
         '200':
           description: The list of revised datasets that the referenced dataset is a member of including the index number of the revision, where 1 is the oldest version of any revision chain