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HRA Digital Objects Server

A container for serving digital objects published via the hra-do-processor. It advertises digital objects as Linked Open Data and provides a SPARQL endpoint.

STATUS: ALPHA - The sparql endpoint works as intended and hosting files works, but does not implement the needed content negotiation, vhost handling, and other things we'd like to see in a 1.0 version of this server.

Requirements

To run locally, you will need Docker installed and have run the hra-do-processor and built a deployment using the deploy command which generates a dist folder containing the digital objects and a blazegraph.jnl which holds all of the enriched graphs built by the hra-do-processor.

Running locally

To run locally, first pull the docker container:

docker pull ghcr.io/hubmapconsortium/hra-do-server:main

To run, you will need to mount the /dist volume when starting the container:

docker run -p 8000:8000 -p 8080:8080 --mount type=bind,source=/absolute/path/to/dist,target=/dist -it ghcr.io/hubmapconsortium/hra-do-server:main

This exposes two ports:

  • 8080 - the blazegraph server. In production, you should not expose this port, though it is probably safe to do so.
  • 8000 - the primary port exposed that is intended to be used in production. It hosts the digital objects and is a proxy to the internal blazegraph server's sparql endpoint.

On port 8000, you will have two primary endpoints:

  • /sparql - a SPARQL endpoint that hosts all digital objects' named graphs for live queries
  • /{DIGITAL OBJECT TYPE}/{DIGITAL OBJECT NAME}/{DIGITAL OBJECT VERSION}/ - each digital object has a route like so. When we get content negotiation other routes will become possible.

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