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Sfd5311/rna probes pipeline #992

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Sfd5311/rna probes pipeline #992

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0722b2d
Adding rna-probes-pipeline as submodule
SFD5311 Jan 7, 2025
6cb9c0f
Initial commit of dag for scnra-probes processing
SFD5311 Jan 7, 2025
6d73908
Adding azimuth annotation to dag
SFD5311 Jan 7, 2025
d91048b
Bugfixing downgraded submodules
sunset666 Jan 9, 2025
d5c19d4
Bugfixing downgraded submodules
sunset666 Jan 9, 2025
0acf08e
Bugfixing downgraded submodules
sunset666 Jan 9, 2025
dca5fe1
Bugfixing downgraded submodules
sunset666 Jan 9, 2025
02ac5af
Bugfixing downgraded submodules
sunset666 Jan 9, 2025
c07bc4e
Bugfixing downgraded submodules
sunset666 Jan 9, 2025
7bca37a
Bugfixing downgraded submodules
sunset666 Jan 9, 2025
f55dbce
Bumping rna-probes-pipeline version to v1.0.1
SFD5311 Jan 14, 2025
e6a8804
Adding mappings for new pipeline.
sunset666 Jan 21, 2025
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3 changes: 3 additions & 0 deletions .gitmodules
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Original file line number Diff line number Diff line change
Expand Up @@ -76,3 +76,6 @@
[submodule "src/ingest-pipeline/airflow/dags/cwl/visium-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/visium-pipeline
url = https://github.com/hubmapconsortium/visium-pipeline
[submodule "src/ingest-pipeline/airflow/dags/cwl/rna-probes-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/rna-probes-pipeline
url = https://github.com/hubmapconsortium/rna-probes-pipeline
1 change: 1 addition & 0 deletions src/ingest-pipeline/airflow/dags/cwl/rna-probes-pipeline
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Submodule rna-probes-pipeline added at 5c696e
8 changes: 8 additions & 0 deletions src/ingest-pipeline/airflow/dags/resource_map.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -187,6 +187,14 @@ resource_map:
- 'task_re': '.*'
'queue': 'general'
'threads': 6
- 'dag_re': 'rna_with_probes'
'preserve_scratch': true
'lanes': 2
# 'lanes': 12
'tasks':
- 'task_re': '.*'
'queue': 'general'
'threads': 6
- 'dag_re': '.*'
'preserve_scratch': true
'lanes': 2
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