v3.10.2

• fix: Filter out empty strings

v3.10.1

• Bugfix: TyPo on workflow_description for Kaggle-2

v3.10.0

• General: Initial changes to add addt'l metadata to the dag provenance…
• Move calculated metadata to top level
• Bump portal-containers v0.0.44
• Updated kaggle-2 pipeline for portal-viz with new steps
• Adding Kaggle-1 ome tiff metadata step for portal viz
• Bugfix task_id referenced in workflow
• Bugfix adding simple description for RNASeq pipeline since it is a required field
• Updating Kaggle-2 DAG with workflow schema
• Bugfix: adding workflow for repeated steps to account for different parameters being used
• Bugfix: Updated call of workflows for make_send function
• Bugfix: Adding missing documentation_url to workflow steps

v3.9.2

• Bugfix: GeoMx assay mapping name

v3.9.1

• Bugfix: missing GeoMx mappings

v3.9.0

• Bumping visium-pipeline version to v1.1.2
• Publications fix
• S&C: Set non_global_files to empty so that when we copy it over to datasets
• Bump IVT v0.0.30
• New pipeline GeoMx

v3.8.0

• Bugfix: parsing new response from rules engine
• Metadata reorganization
• Bump sprm submodule to v1.4.12
• Bugfix: Removing invalid parameter for pipeline
• Add Kaggle 2 module
• Adding processes to ometiff step in CellDIVE pipeline
• Kaggle pipelines shorthand renaming.
• Bugfix: dataset creation
• Bump multiome-rna-atac-pipeline submodule to v1.2.2
• Adding visium with probes pipeline

Full Changelog: v3.7.1...v3.7.2

v3.7.1

• Processes parameter added for ometiff creation step in CellDIVE pipeline

v3.7.0

• New pipeline kaggle-2 Segmentation

v3.6.0

• Update for CellDIVE pipeline.
• Bugfixes on Azimuth re-annotations.