v3.3.14

• Syncing bugfix for organism paramenter in visium pipeline
• Sfd5311/multiome qc
• Bump CODEX to 2.6.1

v3.3.13

• DAG to find and change file extensions, defaults to TIF -> TIFF
• CODEX DAG bugfix for standalone steps

v3.3.12

• Removing TypeClient references
• Sfd5311/multiome version bump
• Bumping multiome-rna-atac-pipeline version to v1.1.6
• Add deepcelltypes repository, workflow steps
• Bump ingest-validation-tools v1.0.1

v3.3.11

• Bugfix missing token

v3.3.10

• Bump salmon-rnaseq submodule to v2.2.6
• Bug fix new token requirement
• Removing old bdbag

v3.3.9

• Updated resource_map
• Bumping salmon-rnaseq
• Submodules: Bump IVTools to v0.0.22
• S&C: Add check to make sure that the destination path does not yet exists
• Sfd5311/murine rna support
• StatusChanger bugfix for None status by @gesinaphillips in #894

v3.3.8

What's Changed

• Bugfix: removing check of entity-api fields

v3.3.7

• Bump multiome-rna-atac-pipeline submodule version to v1.1.4
• S&C: Fix the non_global_files issues
• Bump sprm submodule to v1.4.1
• StatusChanger update to allow appending to existing metadata in Entity API
• Updated CellDIVE params
• General: Fixes to address Sunset's comments
• General: Bump IVTests

v3.3.6

• Updating MAX_IN_LINE_FILES limit

v3.3.5

• Bumping salmon-rnaseq to v2.2.3
• DAG snareseq fix
• Multiome Updates