Update index.md

intbio · Feb 26, 2024 · bbb8c24 · bbb8c24
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diff --git a/workshops/3Dstruct_analysis/index.md b/workshops/3Dstruct_analysis/index.md
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     - do analysis in Python using MDanalysis and Prody libraries
     - select, extract and analyze atom coordinates and dihedral angles.
     - add hydrogens to the structure
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  ### Part 2. 
- - identify protonation states
- - assign charges to the atoms
- - identify hydrogen bonds
- - compute and analyze electrostatic surface
- - build contact maps
- - identify domains
- - find homologous structures
- - make structural alignment, compute RMSD
- - generate sequence alignment from structural alignment
- - identify residue conservation
- - analyze dynamics using elastic networks models
+- identify protonation states
+- assign charges to the atoms
+- identify hydrogen bonds
+- compute and analyze electrostatic surface
+- build contact maps
+- identify domains
+- find homologous structures
+- make structural alignment, compute RMSD
+- generate sequence alignment from structural alignment
+- identify residue conservation
+- analyze dynamics using elastic networks models
 
 ## Jupyter notebook
 - [3Dstruct_analysis.ipynb](3Dstruct_analysis.ipynb)