feat(IPVC-2335): add the load-seqinfo step (#22)

invitae · Apr 15, 2024 · 8431f27 · 8431f27
1 parent d65d764
commit 8431f27
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/sbin/uta-load b/sbin/uta-load
@@ -64,12 +64,14 @@ uta --conf=etc/global.conf --conf=etc/[email protected] load-txinfo "$worki
 uta --conf=etc/global.conf --conf=etc/[email protected] load-exonset "$working_dir/exonsets.gz" 2>&1 | \
     tee "$log_dir/load-exonsets.log"
 
+# Load seqinfo into the seq and seqanno tables.
+uta --conf=etc/global.conf --conf=etc/[email protected] load-seqinfo "$loading_dir/seqinfo.gz" 2>&1 | \
+    tee "$logs_dir/load-seqinfo.log"
+
 # Create cigar strings for all rows in tx_alt_exon_pairs_v view and update exon_aln table.
 uta --conf=etc/global.conf --conf=etc/[email protected] align-exons 2>&1 | \
     tee "$log_dir/align-exons.log"
 
-# Load seqinfo?
-
 ### run diff
 sbin/uta-diff "$source_uta_v" "$loading_uta_v"