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SherryDong
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Package: NetBID2 | ||
Type: Package | ||
Title: Network-based Bayesian Inference of Drivers, version 2 | ||
Version: 0.1.2 | ||
Authors@R: person('Xinran', 'Dong', email = 'xinran.dong@stjude.org', role = c('aut', 'cre')) | ||
Maintainer@R: person('Xinran', 'Dong', email = 'xinran.dong@stjude.org') | ||
Description: An integrative systems biology algorithm to infer drivers of phenotype based on data-driven context-specific network and Bayesian inference. | ||
License: GPL (>= 2) | ||
Encoding: UTF-8 | ||
LazyData: true | ||
Depends: | ||
R (>= 3.6.0), | ||
Matrix (>= 1.2-17), | ||
SummarizedExperiment (>= 1.14.0), | ||
lme4 (>= 1.1-21), | ||
Biobase (>= 2.38.0), | ||
GEOquery (>= 2.46.15), | ||
limma (>= 3.34.9), | ||
impute (>= 1.52.0), | ||
tximport (>= 1.6.0), | ||
DESeq2 (>= 1.20.0), | ||
ConsensusClusterPlus (>= 1.38.0), | ||
aricode (>= 0.1.1), | ||
igraph (>= 1.1.2), | ||
RColorBrewer (>= 1.1-2), | ||
plot3D (>= 1.1.1), | ||
plotrix (>= 3.7-3), | ||
umap (>= 0.2.0.0), | ||
ComplexHeatmap (>= 1.17.1), | ||
ordinal (>= 2019.4-25), | ||
MCMCglmm (>= 2.26), | ||
arm (>= 1.10-1), | ||
reshape (>= 0.8.7), | ||
biomaRt (>= 2.34.2), | ||
GSVA (>= 1.22.4), | ||
msigdbr (>= 6.2.1), | ||
openxlsx (>= 4.1.0), | ||
rmarkdown (>= 1.11), | ||
kableExtra (>= 1.1.0), | ||
rhdf5 (>= 2.28.0), | ||
plotly (>= 4.9.0) | ||
Imports: | ||
Suggests: | ||
RoxygenNote: 6.1.1 | ||
Package: NetBID2 | ||
Type: Package | ||
Title: Network-based Bayesian Inference of Drivers, version 2 | ||
Version: 2.0.3 | ||
Authors@R: person('Xinran', 'Dong', email = 'xinran.dong@foxmail.com', role = c('aut', 'cre')) | ||
Maintainer@R: person('Xinran', 'Dong', email = 'xinran.dong@foxmail.com') | ||
Description: An integrative systems biology algorithm to infer drivers of phenotype based on data-driven context-specific network and Bayesian inference. | ||
License: GPL (>= 2) | ||
Encoding: UTF-8 | ||
LazyData: true | ||
Depends: | ||
R (>= 3.6.0), | ||
Matrix (>= 1.2-17), | ||
SummarizedExperiment (>= 1.14.0), | ||
lme4 (>= 1.1-21), | ||
Biobase (>= 2.38.0), | ||
GEOquery (>= 2.46.15), | ||
limma (>= 3.34.9), | ||
impute (>= 1.52.0), | ||
tximport (>= 1.6.0), | ||
DESeq2 (>= 1.20.0), | ||
ConsensusClusterPlus (>= 1.38.0), | ||
aricode (>= 0.1.1), | ||
igraph (>= 1.1.2), | ||
RColorBrewer (>= 1.1-2), | ||
plot3D (>= 1.1.1), | ||
plotrix (>= 3.7-3), | ||
umap (>= 0.2.0.0), | ||
ComplexHeatmap (>= 1.17.1), | ||
ordinal (>= 2019.4-25), | ||
MCMCglmm (>= 2.26), | ||
arm (>= 1.10-1), | ||
reshape (>= 0.8.7), | ||
biomaRt (>= 2.34.2), | ||
GSVA (>= 1.22.4), | ||
msigdbr (>= 6.2.1), | ||
openxlsx (>= 4.1.0), | ||
rmarkdown (>= 1.11), | ||
kableExtra (>= 1.1.0), | ||
rhdf5 (>= 2.28.0), | ||
plotly (>= 4.9.0) | ||
Imports: | ||
Suggests: | ||
RoxygenNote: 7.1.1 |
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