Test if this helps with github error

loculus-project · Aug 12, 2024 · 27bc013 · 27bc013
1 parent 77ebf40
commit 27bc013
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diff --git a/ena-submission/Snakefile b/ena-submission/Snakefile
@@ -84,7 +84,7 @@ rule trigger_submission_to_ena_from_file:  # for testing
         input_file="results/approved_ena_submission_list.json",
         config="results/config.yaml",
     output:
-        submitted=touch("results/triggered"),
+        submitted=touch("results/triggered_from_file"),
     params:
         log_level=LOG_LEVEL,
     shell:

diff --git a/ena-submission/scripts/trigger_submission_to_ena.py b/ena-submission/scripts/trigger_submission_to_ena.py
@@ -95,6 +95,8 @@ def trigger_submission_to_ena(log_level, config_file, input_file=None):
         github_pat = os.getenv("GITHUB_PAT")
         if not github_pat:
             github_pat = config.github_pat
+
+        logger.info(github_username)
         response = requests.get(
             config.github_url,
             auth=HTTPBasicAuth(github_username, github_pat),