feat(ena-submission): Create ena assembly#2332

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anna-parker wants to merge 14 commits intomainfrom create_ena_assembly

+2,839-96

Commits on Aug 26, 2024

Commits on Aug 28, 2024

Commits on Aug 29, 2024

feat(ena-submission): Edits while PR reviewing create ena projects (#2663 )
corneliusroemer
authored
Create sample.xml objects to send to ENA using PHAG4E's metadata field mapping. Keep state in sample_table. Send slack notifications if submission fails.
anna-parker
committed
Clean up construct_sample_set_object function and add new columns in migration
anna-parker
committed
Clean up tests to use test files
anna-parker
committed
Test needs to be set to true while testing
anna-parker
committed
Create assembly, add webin-cli to docker container, add call to API to check status of assembly submission.
anna-parker
committed
Test get-ena-submission-list cronjob is still working
anna-parker
committed
Modify assembly_name for testing
anna-parker
committed
Correct logs, revert cronjob to normal frequency as working
anna-parker
committed