Add option to not align sequences and test on dummy pipeline. #2477
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anna-parker
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chaoran-chen and
corneliusroemer
theosanderson
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Aug 22, 2024
… have less duplication
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… problem - weird it hasn't come up before...
Co-authored-by: Theo Sanderson <[email protected]>
Co-authored-by: Theo Sanderson <[email protected]>
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resolves #2239
preview URL: https://add-no-alignment-prepro-o.loculus.org/
Summary
We keep saying it is easy to write a prepro pipeline without alignment/nextclade - this adds an option to our current nextclade pipeline to run without alignment/nextclade (always when no nextclade dataset is given). The nice thing about this is we still keep all the metadata field processing options.
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