Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add geonames pod #3479

Draft
wants to merge 20 commits into
base: main
Choose a base branch
from
Draft

Add geonames pod #3479

wants to merge 20 commits into from

Conversation

anna-parker
Copy link
Contributor

resolves #

preview URL:

Summary

Screenshot

PR Checklist

  • All necessary documentation has been adapted.
  • The implemented feature is covered by an appropriate test.

@anna-parker anna-parker added the preview Triggers a deployment to argocd label Dec 23, 2024
@anna-parker anna-parker added preview Triggers a deployment to argocd and removed preview Triggers a deployment to argocd labels Dec 23, 2024
@anna-parker
Copy link
Contributor Author

Final step keeps failing with

(base) mambauser@loculus-geonames-6bcd9cbdb4-t2nvx:/package$ ls results/
adm.tsv  allCountries.txt
(base) mambauser@loculus-geonames-6bcd9cbdb4-t2nvx:/package$ ls results/
adm.tsv
(base) mambauser@loculus-geonames-6bcd9cbdb4-t2nvx:/package$ command terminated with exit code 137

from stack exchange this looks like an OOM issue - but the commands finish locally in a docker container and I see using top pod that memory usage typically stays quite low:

ubectl top pod -n prev-add-geonames-pod
NAME                                                              CPU(cores)   MEMORY(bytes)
loculus-backend-75b867c54d-m9mnd                                  297m         374Mi
loculus-database-97b5c9996-rgsmk                                  63m          221Mi
loculus-docs-64c67c78b-mh99w                                      0m           11Mi
loculus-ena-submission-78bdcf7546-d7kxz                           1m           38Mi
loculus-geonames-858dc7f674-wzrfr                                 1m           25Mi

@anna-parker anna-parker removed the preview Triggers a deployment to argocd label Dec 23, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant