feat(deposition): Automate metadata revision of ENA submissions

[anna-parker]

resolves #3177

preview URL:

Summary

1. Refactors code, adding the mapping of loculus fields to the manifest fields into a dictionary in the config for clarity, additionally correcting the mapping of the consensusSequenceSoftware to PROGRAM and sequencingInstrument to PLATFORM.
2. This enables automatic revision of sequences already submitted to the ENA, it checks for certain edge cases:

• an older version is added later -> will not revise data
• a version is uploaded where fields have been revised that end up in the assembly manifest -> biosample will be manually updated and db will be put into state has errors as a manual revision is required for the assembly update.
• a revision tries to update a biosample or bioproject accession -> this is not allowed and also puts the db into an error state

Screenshot

PR Checklist

• Ensure bioproject and biosample cannot be revised
• Test on ENA dev
  • test all current cases still work (with known bioproject, biosample and sra as well)
  • test that if old version is uploaded we error
  • check that sample can be revised
  • check that assembly can be revised
  • check error if changes are in manifest and cannot be automatically revised
• Create change list and check if changed field is in manifest (must be updated via email).