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Add the ontoportal mapping model json converter #281

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merged 12 commits into from
Mar 21, 2023
Merged

Add the ontoportal mapping model json converter #281

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19387a5
add conversion to ontoportal json tests
syphax-bouazzouni Jul 4, 2022
a1db906
add the to_ontoportal_json converter
syphax-bouazzouni Jul 4, 2022
ae8787b
add the write_sssom_ontoportal_json test
syphax-bouazzouni Jul 4, 2022
afe648f
add the write_ontoportal_json function
syphax-bouazzouni Jul 4, 2022
6321bc6
add the ontoportal writer to the list of writers of the CLI
syphax-bouazzouni Jul 4, 2022
dd38bca
change the serialisation parameter to use "ontoportal_json"
syphax-bouazzouni Jul 4, 2022
74c6bec
fix linters issues
syphax-bouazzouni Jul 4, 2022
74be1f1
add "ontoportal_json" to SSSOM_EXPORT_FORMATS array
syphax-bouazzouni Jul 4, 2022
3628e8b
Merge branch 'mapping-commons:master' into pr/feat/add-ontoportal-jso…
syphax-bouazzouni Mar 20, 2023
9bf3037
remove the process section form the ontoportal format
syphax-bouazzouni Mar 20, 2023
2546546
auto lint code
syphax-bouazzouni Mar 21, 2023
aedcd78
update the test for the new ontoportal mappings format
syphax-bouazzouni Mar 21, 2023
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add the write_ontoportal_json function
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@syphax-bouazzouni
syphax-bouazzouni committed Jul 4, 2022
commit afe648f0fb446363ff4d765e15c733649dd5cf89
10 changes: 10 additions & 0 deletions sssom/writers.py
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Expand Up @@ -143,6 +143,16 @@ def write_owl(
print(t.decode(), file=file)


def write_ontoportal_json(msdf: MappingSetDataFrame, output: TextIO, serialisation="json") -> None:
if serialisation == "json":
data = to_ontoportal_json(msdf)
json.dump(data, output, indent=2)
else:
raise ValueError(
f"Unknown json format: {serialisation}, currently only json supported"
)


# Converters
# Converters convert a mappingsetdataframe to an object of the supportes types (json, pandas dataframe)

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