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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 245 57

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 50 5

  3. MAxO MAxO Public

    Medical action ontology

    HTML 55 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 16 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 23 6

Repositories

Showing 10 of 252 repositories
  • zfin-genotype-to-phenotype-ingest Public
    monarch-initiative/zfin-genotype-to-phenotype-ingest’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 26, 2025
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 23 BSD-3-Clause 6 233 (3 issues need help) 15 Updated Mar 26, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 245 CC-BY-4.0 57 377 (2 issues need help) 53 Updated Mar 26, 2025
  • aurelian Public

    A motley crew of agents developed by the Monarch Initiative

    monarch-initiative/aurelian’s past year of commit activity
    Python 5 MIT 1 12 1 Updated Mar 25, 2025
  • monarch-ingest-commons Public

    Shared resources for Monarch KG ingests

    monarch-initiative/monarch-ingest-commons’s past year of commit activity
    Python 0 0 0 0 Updated Mar 25, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 69 5 Updated Mar 25, 2025
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 662 BSD-3-Clause 90 63 10 Updated Mar 25, 2025
  • monarch_pheval Public
    monarch-initiative/monarch_pheval’s past year of commit activity
    Jinja 1 MIT 1 7 2 Updated Mar 25, 2025
  • pheval Public

    A framework for empirical evaluation of phenotype matching and prioritisation

    monarch-initiative/pheval’s past year of commit activity
    Python 12 Apache-2.0 3 29 3 Updated Mar 25, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 7 3 239 (1 issue needs help) 6 Updated Mar 24, 2025
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