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Do not merge?: Subclass Sync - Direct in source, indirect in Mondo - Mini build #717

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Do not merge?: Subclass Sync - Direct in source, indirect in Mondo - Mini build #717

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Subclass Sync - Direct in source, indirect in Mondo - Mini build
joeflack4 Dec 3, 2024
7f25d50
Merge branch 'subclass-sync-direct-source-indirect-mondo' into subcla…
joeflack4 Dec 4, 2024
969d3da
Subclass Sync - Direct in source, indirect in Mondo - Mini build
joeflack4 Dec 5, 2024
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4 changes: 2 additions & 2 deletions src/ontology/imports/omo_import.owl
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Expand Up @@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/mondo-ingest/imports/omo_import.owl>
<http://purl.obolibrary.org/obo/mondo-ingest/releases/2024-11-27/imports/omo_import.owl>
<http://purl.obolibrary.org/obo/mondo-ingest/releases/2024-12-04/imports/omo_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/omo/releases/2024-11-13/omo.owl>)
Annotation(owl:versionInfo "2024-11-27")
Annotation(owl:versionInfo "2024-12-04")

Declaration(Class(<http://purl.obolibrary.org/obo/IAO_0000027>))
Declaration(Class(<http://purl.obolibrary.org/obo/IAO_0000030>))
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4 changes: 2 additions & 2 deletions src/ontology/imports/ro_import.owl
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Expand Up @@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/mondo-ingest/imports/ro_import.owl>
<http://purl.obolibrary.org/obo/mondo-ingest/releases/2024-11-27/imports/ro_import.owl>
<http://purl.obolibrary.org/obo/mondo-ingest/releases/2024-12-04/imports/ro_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ro/releases/2024-04-24/ro.owl>)
Annotation(owl:versionInfo "2024-11-27")
Annotation(owl:versionInfo "2024-12-04")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))
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1 change: 1 addition & 0 deletions src/ontology/reports/doid.subclass.added.robot.tsv
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Expand Up @@ -1503,6 +1503,7 @@ MONDO:0009665 biotinidase deficiency MONDO:0006025 DOID:856 DOID:0050737 autosom
MONDO:0009673 spinal muscular atrophy, type II MONDO:0006025 DOID:0050530 DOID:0050737 autosomal recessive disease
MONDO:0009689 congenital myasthenic syndrome 6 MONDO:0006025 DOID:0110671 DOID:0050737 autosomal recessive disease
MONDO:0009690 congenital myasthenic syndrome 10 MONDO:0006025 DOID:0110668 DOID:0050737 autosomal recessive disease
MONDO:0009696 juvenile myoclonic epilepsy MONDO:0000415 DOID:4890 DOID:0050705 adolescence-adult electroclinical syndrome
MONDO:0009697 Lafora disease MONDO:0006025 DOID:3534 DOID:0050737 autosomal recessive disease
MONDO:0009698 Unverricht-Lundborg syndrome MONDO:0006025 DOID:0111452 DOID:0050737 autosomal recessive disease
MONDO:0009699 action myoclonus-renal failure syndrome MONDO:0006025 DOID:0111444 DOID:0050737 autosomal recessive disease
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2,947 changes: 2,947 additions & 0 deletions src/ontology/reports/doid.subclass.confirmed-direct-source-indirect-mondo.robot.tsv
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2 changes: 0 additions & 2 deletions src/ontology/reports/doid.subclass.confirmed.robot.tsv
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Expand Up @@ -4830,7 +4830,6 @@ MONDO:0009685 Miyoshi myopathy MONDO:0018949 DOID:0070198 DOID:11720 distal myop
MONDO:0009689 congenital myasthenic syndrome 6 MONDO:0018940 DOID:0110671 DOID:3635 congenital myasthenic syndrome
MONDO:0009691 mycosis fungoides MONDO:0000607 DOID:8691 DOID:0060061 primary cutaneous T-cell non-Hodgkin lymphoma
MONDO:0009693 plasma cell myeloma MONDO:0005170 DOID:9538 DOID:0070004 myeloid neoplasm
MONDO:0009696 juvenile myoclonic epilepsy MONDO:0000415 DOID:4890 DOID:0050705 adolescence-adult electroclinical syndrome
MONDO:0009697 Lafora disease MONDO:0020074 DOID:3534 DOID:891 progressive myoclonus epilepsy
MONDO:0009698 Unverricht-Lundborg syndrome MONDO:0020074 DOID:3535 DOID:891 progressive myoclonus epilepsy
MONDO:0009699 action myoclonus-renal failure syndrome MONDO:0020074 DOID:0111444 DOID:891 progressive myoclonus epilepsy
Expand Down Expand Up @@ -7979,7 +7978,6 @@ MONDO:0850368 immunoglobulin heavy-and-light chain MONDO:0019065 DOID:0080935 DO
MONDO:0850371 nonobstructive coronary artery disease MONDO:0005010 DOID:0080938 DOID:3393 coronary artery disorder
MONDO:0850388 childhood supratentorial embryonal tumor with multilayered rosettes, C19MC-altered MONDO:0004378 DOID:0080956 DOID:7841 pediatric cerebral ependymoblastoma
MONDO:0850416 autoimmune epilepsy MONDO:0000568 DOID:0080994 DOID:0060004 autoimmune disorder of central nervous system
MONDO:0850416 autoimmune epilepsy MONDO:0005027 DOID:0080994 DOID:1826 epilepsy
MONDO:0850417 tuberculous encephalopathy MONDO:0018076 DOID:0080995 DOID:399 tuberculosis
MONDO:0850418 diffuse large B-cell lymphoma activated B-cell type MONDO:0018905 DOID:0080996 DOID:0050745 diffuse large B-cell lymphoma
MONDO:0850419 diffuse large B-cell lymphoma germinal center B-cell type MONDO:0018905 DOID:0080997 DOID:0050745 diffuse large B-cell lymphoma
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99 changes: 99 additions & 0 deletions src/ontology/reports/icd10cm.subclass.confirmed-direct-source-indirect-mondo.robot.tsv
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subject_mondo_id subject_mondo_label object_mondo_id subject_source_id object_source_id object_mondo_label
ID SC % >A oboInOwl:source
MONDO:0000245 tinea imbricata MONDO:0004678 ICD10CM:B35.5 ICD10CM:B35 dermatophytosis
MONDO:0000367 taeniasis MONDO:0004664 ICD10CM:B68 ICD10CM:B65-B83 helminthiasis
MONDO:0000916 intestinal infectious disease MONDO:0005550 ICD10CM:A00-A09 ICD10CM:A00-B99 infectious disease
MONDO:0001176 lens disorder MONDO:0002022 ICD10CM:H25-H28 ICD10CM:H00-H59 disorder of orbital region
MONDO:0001195 spotted fever MONDO:0006956 ICD10CM:A77 ICD10CM:A75-A79 Rickettsiosis
MONDO:0001367 chronic congestive splenomegaly MONDO:0002332 ICD10CM:D73.2 ICD10CM:D73 splenic disorder
MONDO:0001416 female reproductive organ cancer MONDO:0005070 ICD10CM:C51-C58 ICD10CM:C00-D49 neoplasm
MONDO:0001444 Chagas disease MONDO:0002428 ICD10CM:B57 ICD10CM:B50-B64 protozoa infectious disease
MONDO:0001633 central retinal artery occlusion MONDO:0002089 ICD10CM:H34.1 ICD10CM:H34 retinal vascular occlusion
MONDO:0001797 chancroid MONDO:0021681 ICD10CM:A57 ICD10CM:A50-A64 sexually transmitted disease
MONDO:0001815 extrapyramidal and movement disease MONDO:0005071 ICD10CM:G20-G26 ICD10CM:G00-G99 nervous system disorder
MONDO:0001876 renal artery atheroma MONDO:0005311 ICD10CM:I70.1 ICD10CM:I70 atherosclerosis
MONDO:0001943 Plasmodium malariae malaria MONDO:0002428 ICD10CM:B52 ICD10CM:B50-B64 protozoa infectious disease
MONDO:0002026 candidiasis MONDO:0002041 ICD10CM:B37 ICD10CM:B35-B49 fungal infectious disease
MONDO:0002067 female breast upper-inner quadrant cancer MONDO:0007254 ICD10CM:C50.2 ICD10CM:C50 breast cancer
MONDO:0002068 female breast lower-inner quadrant cancer MONDO:0007254 ICD10CM:C50.3 ICD10CM:C50 breast cancer
MONDO:0002069 female breast axillary tail cancer MONDO:0007254 ICD10CM:C50.6 ICD10CM:C50 breast cancer
MONDO:0002425 rectosigmoid junction cancer MONDO:0002516 ICD10CM:C19 ICD10CM:C15-C26 digestive system cancer
MONDO:0002428 protozoa infectious disease MONDO:0005550 ICD10CM:B50-B64 ICD10CM:A00-B99 infectious disease
MONDO:0002516 digestive system cancer MONDO:0005070 ICD10CM:C15-C26 ICD10CM:C00-D49 neoplasm
MONDO:0002875 parasitic ectoparasitic infectious disease MONDO:0005550 ICD10CM:B85-B89 ICD10CM:A00-B99 infectious disease
MONDO:0002898 skin cancer MONDO:0005070 ICD10CM:C43-C44 ICD10CM:C00-D49 neoplasm
MONDO:0003664 hemolytic anemia MONDO:0005570 ICD10CM:D55-D59 ICD10CM:D50-D89 hematologic disorder
MONDO:0004473 epiglottis cancer MONDO:0004608 ICD10CM:C10.1 ICD10CM:C10 oropharynx cancer
MONDO:0004525 scabies MONDO:0002875 ICD10CM:B86 ICD10CM:B85-B89 parasitic ectoparasitic infectious disease
MONDO:0004664 helminthiasis MONDO:0005550 ICD10CM:B65-B83 ICD10CM:A00-B99 infectious disease
MONDO:0004678 dermatophytosis MONDO:0002041 ICD10CM:B35 ICD10CM:B35-B49 fungal infectious disease
MONDO:0005021 dilated cardiomyopathy MONDO:0004994 ICD10CM:I42.0 ICD10CM:I42 cardiomyopathy
MONDO:0005041 glaucoma MONDO:0002022 ICD10CM:H40-H42 ICD10CM:H00-H59 disorder of orbital region
MONDO:0005044 hypertensive disorder MONDO:0005385 ICD10CM:I10-I16 ICD10CM:I00-I99 vascular disorder
MONDO:0005109 HIV infectious disease MONDO:0005550 ICD10CM:B20-B20 ICD10CM:A00-B99 infectious disease
MONDO:0005154 liver disorder MONDO:0004335 ICD10CM:K70-K77 ICD10CM:K00-K95 digestive system disorder
MONDO:0005298 osteoporosis MONDO:0005381 ICD10CM:M81 ICD10CM:M80-M85 bone disorder
MONDO:0005311 atherosclerosis MONDO:0005385 ICD10CM:I70 ICD10CM:I70-I79 vascular disorder
MONDO:0005340 alopecia areata MONDO:0024481 ICD10CM:L63 ICD10CM:L60-L75 skin appendage disorder
MONDO:0005519 renal pelvis carcinoma MONDO:0006295 ICD10CM:C65 ICD10CM:C64-C68 malignant urinary system neoplasm
MONDO:0005654 ascariasis MONDO:0004664 ICD10CM:B77 ICD10CM:B65-B83 helminthiasis
MONDO:0005657 aspergillosis MONDO:0002041 ICD10CM:B44 ICD10CM:B35-B49 fungal infectious disease
MONDO:0005672 blastomycosis MONDO:0002041 ICD10CM:B40 ICD10CM:B35-B49 fungal infectious disease
MONDO:0005706 coccidioidomycosis MONDO:0002041 ICD10CM:B38 ICD10CM:B35-B49 fungal infectious disease
MONDO:0005714 congenital syphilis MONDO:0021681 ICD10CM:A50 ICD10CM:A50-A64 sexually transmitted disease
MONDO:0005724 cryptococcosis MONDO:0002041 ICD10CM:B45 ICD10CM:B35-B49 fungal infectious disease
MONDO:0005738 echinococcosis MONDO:0004664 ICD10CM:B67 ICD10CM:B65-B83 helminthiasis
MONDO:0005746 enterobiasis MONDO:0004664 ICD10CM:B80 ICD10CM:B65-B83 helminthiasis
MONDO:0005777 granuloma inguinale MONDO:0021681 ICD10CM:A58 ICD10CM:A50-A64 sexually transmitted disease
MONDO:0005844 chalazion MONDO:0003382 ICD10CM:H00.1 ICD10CM:H00 eyelid disorder
MONDO:0005848 miliary tuberculosis MONDO:0018076 ICD10CM:A19 ICD10CM:A15-A19 tuberculosis
MONDO:0005894 paracoccidioidomycosis MONDO:0002041 ICD10CM:B41 ICD10CM:B35-B49 fungal infectious disease
MONDO:0005921 Plasmodium vivax malaria MONDO:0002428 ICD10CM:B51 ICD10CM:B50-B64 protozoa infectious disease
MONDO:0005989 toxoplasmosis MONDO:0002428 ICD10CM:B58 ICD10CM:B50-B64 protozoa infectious disease
MONDO:0005996 trichuriasis MONDO:0004664 ICD10CM:B79 ICD10CM:B65-B83 helminthiasis
MONDO:0006004 vasomotor rhinitis MONDO:0003014 ICD10CM:J30.0 ICD10CM:J30 rhinitis
MONDO:0006011 viral hepatitis MONDO:0005550 ICD10CM:B15-B19 ICD10CM:A00-B99 infectious disease
MONDO:0006014 vulvovaginal candidiasis MONDO:0002026 ICD10CM:B37.3 ICD10CM:B37 candidiasis
MONDO:0006170 conjunctival disorder MONDO:0002022 ICD10CM:H10-H11 ICD10CM:H00-H59 disorder of orbital region
MONDO:0006295 malignant urinary system neoplasm MONDO:0005070 ICD10CM:C64-C68 ICD10CM:C00-D49 neoplasm
MONDO:0006496 palsy MONDO:0005071 ICD10CM:G80-G83 ICD10CM:G00-G99 nervous system disorder
MONDO:0006534 cholinergic urticaria MONDO:0005492 ICD10CM:L50.5 ICD10CM:L50 urticaria
MONDO:0006618 vibratory urticaria MONDO:0005492 ICD10CM:L50.4 ICD10CM:L50 urticaria
MONDO:0006643 alcoholic cardiomyopathy MONDO:0004994 ICD10CM:I42.6 ICD10CM:I42 cardiomyopathy
MONDO:0006826 kwashiorkor MONDO:0006873 ICD10CM:E40 ICD10CM:E40-E46 nutritional deficiency disease
MONDO:0006848 marasmus MONDO:0006873 ICD10CM:E41 ICD10CM:E40-E46 nutritional deficiency disease
MONDO:0006946 renal osteodystrophy MONDO:0001343 ICD10CM:N25.0 ICD10CM:N25 impaired renal function disease
MONDO:0006947 renovascular hypertension MONDO:0005044 ICD10CM:I15.0 ICD10CM:I15 hypertensive disorder
MONDO:0006956 Rickettsiosis MONDO:0005550 ICD10CM:A75-A79 ICD10CM:A00-B99 infectious disease
MONDO:0007080 glucocorticoid-remediable aldosteronism MONDO:0001422 ICD10CM:E26.02 ICD10CM:E26.0 primary aldosteronism
MONDO:0007448 familial dermatographia MONDO:0005492 ICD10CM:L50.3 ICD10CM:L50 urticaria
MONDO:0007810 autosomal dominant ichthyosis vulgaris MONDO:0015947 ICD10CM:Q80.0 ICD10CM:Q80 inherited ichthyosis
MONDO:0008575 nicotine dependence MONDO:0002494 ICD10CM:F17 ICD10CM:F10-F19 substance-related disorder
MONDO:0008890 progressive bulbar palsy MONDO:0020128 ICD10CM:G12.22 ICD10CM:G12.2 motor neuron disorder
MONDO:0011057 cerebrovascular disorder MONDO:0005385 ICD10CM:I60-I69 ICD10CM:I00-I99 vascular disorder
MONDO:0011728 benign essential blepharospasm MONDO:0003441 ICD10CM:G24.5 ICD10CM:G24 dystonic disorder
MONDO:0015484 cysticercosis MONDO:0004664 ICD10CM:B69 ICD10CM:B65-B83 helminthiasis
MONDO:0015573 subacute cutaneous lupus erythematosus MONDO:0004670 ICD10CM:L93.1 ICD10CM:L93 lupus erythematosus
MONDO:0015925 interstitial lung disease MONDO:0005087 ICD10CM:J80-J84 ICD10CM:J00-J99 respiratory system disorder
MONDO:0016158 narcolepsy-cataplexy syndrome MONDO:0003406 ICD10CM:G47.4 ICD10CM:G47 sleep-wake disorder
MONDO:0016472 dracunculiasis MONDO:0004664 ICD10CM:B72 ICD10CM:B65-B83 helminthiasis
MONDO:0017137 onchocerciasis MONDO:0004664 ICD10CM:B73 ICD10CM:B65-B83 helminthiasis
MONDO:0017610 epidermolysis bullosa simplex MONDO:0006541 ICD10CM:Q81.0 ICD10CM:Q81 epidermolysis bullosa
MONDO:0018076 tuberculosis MONDO:0005550 ICD10CM:A15-A19 ICD10CM:A00-B99 infectious disease
MONDO:0018312 histoplasmosis MONDO:0002041 ICD10CM:B39 ICD10CM:B35-B49 fungal infectious disease
MONDO:0019136 Zygomycosis MONDO:0002041 ICD10CM:B46 ICD10CM:B35-B49 fungal infectious disease
MONDO:0019322 pemphigus vegetans MONDO:0006594 ICD10CM:L10.1 ICD10CM:L10 pemphigus
MONDO:0019345 shigellosis MONDO:0000916 ICD10CM:A03 ICD10CM:A00-A09 intestinal infectious disease
MONDO:0019356 urogenital tract malformation MONDO:0021147 ICD10CM:Q60-Q64 ICD10CM:Q00-Q99 disorder of development or morphogenesis
MONDO:0019444 trichinellosis MONDO:0004664 ICD10CM:B75 ICD10CM:B65-B83 helminthiasis
MONDO:0019558 discoid lupus erythematosus MONDO:0004670 ICD10CM:L93.0 ICD10CM:L93 lupus erythematosus
MONDO:0019992 pseudohypoparathyroidism MONDO:0001220 ICD10CM:E20.1 ICD10CM:E20 hypoparathyroidism
MONDO:0020022 central nervous system malformation MONDO:0021147 ICD10CM:Q00-Q07 ICD10CM:Q00-Q99 disorder of development or morphogenesis
MONDO:0020800 demyelinating disease of central nervous system MONDO:0005071 ICD10CM:G35-G37 ICD10CM:G00-G99 nervous system disorder
MONDO:0021527 benign neoplasm of meninges MONDO:0005165 ICD10CM:D32 ICD10CM:D10-D36 benign neoplasm
MONDO:0021697 chlamydia infectious disease MONDO:0005550 ICD10CM:A70-A74 ICD10CM:A00-B99 infectious disease
MONDO:0024356 primary central sleep apnea syndrome MONDO:0005296 ICD10CM:G47.31 ICD10CM:G47.3 sleep apnea syndrome
MONDO:0024644 myocardial ischemia MONDO:0005385 ICD10CM:I20-I25 ICD10CM:I00-I99 vascular disorder
MONDO:0044210 thalassemia minor MONDO:0000984 ICD10CM:D56.3 ICD10CM:D56 thalassemia
MONDO:0056798 disorder of appendix MONDO:0004335 ICD10CM:K35-K38 ICD10CM:K00-K95 digestive system disorder
MONDO:0100491 generalized pustular psoriasis MONDO:0005083 ICD10CM:L40.1 ICD10CM:L40 psoriasis
2 changes: 2 additions & 0 deletions src/ontology/reports/icd10who.subclass.confirmed-direct-source-indirect-mondo.robot.tsv
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subject_mondo_id subject_mondo_label object_mondo_id subject_source_id object_source_id object_mondo_label
ID SC % >A oboInOwl:source
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