Name Genebed according to ensembl version

mskcc · Sep 18, 2024 · c25de5f · c25de5f
1 parent 7194335
commit c25de5f
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/modules/local/metafusion/genebed/main.nf b/modules/local/metafusion/genebed/main.nf
@@ -9,6 +9,7 @@ process METAFUSION_GENEBED {
 
     input:
     tuple val(meta), path(gff)
+    val ensembl_version
 
     output:
     tuple val(meta), path("*.metafusion.gene.bed"), emit: metafusion_gene_bed
@@ -23,7 +24,7 @@ process METAFUSION_GENEBED {
     """
     final_generate_v75_gene_bed.R \\
         $gff \\
-        ${prefix}.metafusion.gene.bed
+        ${ensembl_version}.metafusion.gene.bed
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":

diff --git a/subworkflows/local/prepare_references.nf b/subworkflows/local/prepare_references.nf
@@ -90,7 +90,8 @@ workflow PREPARE_REFERENCES {
     )
 
     METAFUSION_GENEBED(
-        AGAT_SPADDINTRONS.out.gff
+        AGAT_SPADDINTRONS.out.gff,
+        params.ensembl_version
     )
 
     METAFUSION_GENEINFO(