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21 Open 33 Closed
21 Open 33 Closed
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Issues list

Delay in tasks that are cached with storeDir bug Something isn't working
#131 opened Nov 4, 2024 by anoronh4
@anoronh4
references only run enhancement New feature or request
#130 opened Oct 16, 2024 by anoronh4
update for GRCh38 enhancement New feature or request
#129 opened Sep 25, 2024 by anoronh4
1
samplesheet check fails when fastq_2 is missing bug Something isn't working
#123 opened Sep 10, 2024 by anoronh4
fingerprint enhancement New feature or request
#122 opened Aug 30, 2024 by anoronh4
TMPDIR not passed into bash script bug Something isn't working
#121 opened Aug 16, 2024 by anoronh4
add preseq qc enhancement New feature or request
#120 opened Aug 13, 2024 by anoronh4
fix dockerfile
#106 opened Apr 14, 2024 by anoronh4
1
orphaned parameter params.read_length backburner bug Something isn't working
#104 opened Jan 23, 2024 by anoronh4
Losing unmapped reads after alignment
#92 opened Sep 13, 2023 by anoronh4
Fix pytest backburner
#64 opened Aug 10, 2023 by anoronh4
StarFusion results not reproducible
#63 opened Aug 3, 2023 by pintoa1-mskcc
1
estimate strand specificity enhancement New feature or request
#57 opened Jul 18, 2023 by anoronh4
Add splicing analysis backburner
#27 opened Mar 29, 2023 by anoronh4
consider arriba visualization backburner
#24 opened Mar 21, 2023 by anoronh4
5
QC of T cell regions enhancement New feature or request
#23 opened Mar 21, 2023 by anoronh4
de-noise or error correct sequences with UMI barcoding backburner enhancement New feature or request question Further information is requested
#22 opened Mar 21, 2023 by anoronh4
1
fix nextflow schema bug Something isn't working documentation Improvements or additions to documentation
#17 opened Mar 7, 2023 by anoronh4
Reduce storage used by intermediate files enhancement New feature or request
#14 opened Mar 7, 2023 by anoronh4
1
1
UMI retention with single-end reads bug backburner
#13 opened Mar 1, 2023 by anoronh4
Split merged fastqs and merge aligned bams after markduplicates enhancement New feature or request
#6 opened Jan 25, 2023 by anoronh4
ProTip! Exclude everything labeled bug with -label:bug.