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Bugfix/workflow logic issues #979

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merged 4 commits into from
Mar 16, 2023
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anoronh4
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Closes #975 and closes #974 in preparation for Tempo 2.0

…it does not appear in the ansi log when the condition is not met (params.assayType != 'genome'
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i have added back logic for turning the lohhla workflow on when the mutsig workflow is turned on. even though lohhla results are not technically required to run mutational signatures, we run workflows as a whole, and snv will not run even partially when lohhla is turned off (in fact there's an error if loh_wf is not invoked).

@gongyixiao gongyixiao merged commit 1d215b4 into develop Mar 16, 2023
@gongyixiao gongyixiao deleted the bugfix/workflow_logic_issues branch March 16, 2023 18:14
@gongyixiao gongyixiao linked an issue Mar 16, 2023 that may be closed by this pull request
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