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spaceranger_bump_version #7088

Merged
merged 14 commits into from
Nov 28, 2024
Merged

spaceranger_bump_version #7088

merged 14 commits into from
Nov 28, 2024

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abartlett004
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@abartlett004 abartlett004 commented Nov 25, 2024

PR checklist

Bump version of spaceranger (in part, to be able to analyze visium hd data)

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@edmundmiller
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Okay finally got all of the tests to bump, lints should be ignored(ie the "missing" versions, these don't run on my laptop and take a minute) but let's get another set of eyes on this.

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@LouisLeNezet LouisLeNezet left a comment

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Seems good to me.

@edmundmiller edmundmiller merged commit b4d8dd4 into master Nov 28, 2024
19 of 30 checks passed
@edmundmiller edmundmiller deleted the spaceranger_bump_version branch November 28, 2024 15:00
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4 participants