Merge pull request #160 from openvax/make-tmp-dir

Creating a tmp subfolder if it does not exist, in the workdir; bumping pipeline version
openvax · Jul 24, 2024 · 4cc4b56 · 4cc4b56
2 parents 03ba570 + 022fcff
commit 4cc4b56
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diff --git a/docker/VERSION b/docker/VERSION
@@ -1 +1 @@
-0.6.2
+1.0.0
diff --git a/pipeline/Snakefile b/pipeline/Snakefile
@@ -30,6 +30,10 @@ include:
 include:
     "qc.rules"
 
+# make a workdir "tmp" subdirectory if it doesn't exist - needed for some processes
+if not os.path.exists("/outputs/tmp"):
+  os.makedirs("/outputs/tmp")
+
 # copy all fragments over to the sample-specific workdir, create if it doesn't exist
 if not os.path.exists(WORKDIR):
   os.makedirs(WORKDIR)