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nf-villumina 2.0.1 [2022-08-10]

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@peterk87 peterk87 released this 10 Aug 21:11
2.0.1
83c2891
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Learn about vigilant mode.

Adds

  • --skip_fastp option to skip running fastp QC on input reads

Updates

  • most pipeline dependencies to latest versions
    • Use centrifuge-core instead of centrifuge from Bioconda to remove outdated Python dependency
  • taxid list files for Bacteria and Viruses
  • Mamba by default for conda profile

Fixes

  • compatibility with 22.xx+ versions of Nextflow.
  • issue with blastn search against 2022-07-31 release of nt DB using BLAST+ v2.9.0. BLAST+ updated to v2.13.0.

Removed

  • unused pipeline dependencies in environment.yml
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