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@pfmc-assessments

PFMC assessments

Repositories related to stock assessments for the Pacific Fishery Management Council

The pfmc-assessments GitHub Organization

Repositories used by those involved in stock assessments for U.S. West Coast fish populations associated with the Pacific Fishery Management Council (PFMC). Many of the contributors and users are at NOAA's Northwest and Southwest Fisheries Science Centers.

Some of the commonly used repositories within this organization include

repository use last commit
nwfscSurvey Analysis of the NWFSC trawl surveys date
PacFIN.Utilities Manipulate data from the PacFIN database for assessments date
nwfscAgeingError Estimate ageing error given double-reads of hard structures (e.g., otoliths) date
nwfscDiag Diagnostics for west coast groundfish assessments date
sa4ss Generate a stock assessment document from Stock Synthesis output date

Our internal handbook for PFMC groundfish assessments is another useful resource.

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  1. nwfscSurvey nwfscSurvey Public

    Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments

    R 10 8

  2. PacFIN.Utilities PacFIN.Utilities Public

    R code to manipulate data from the PacFIN database for assessments

    R 7 2

  3. nwfscDiag nwfscDiag Public

    Tool to run diagnostics for U.S. West Coast groundfish stock assessments using Stock Synthesis

    R 2

  4. AgeingError AgeingError Public

    Wrapper for tool to estimate ageing error given double-reads of hard structures (e.g., otoliths)

    R 9 5

  5. sa4ss sa4ss Public

    Generate a stock assessment document from Stock Synthesis output

    TeX 12 7

Repositories

Showing 10 of 31 repositories
  • PacFIN.Utilities Public

    R code to manipulate data from the PacFIN database for assessments

    pfmc-assessments/PacFIN.Utilities’s past year of commit activity
    R 7 2 43 1 Updated Dec 27, 2024
  • yellowtail_2025 Public

    Assessment repository for the 2025 assessment of the northern stock of Yellowtail rockfish off the West Coast of the U.S.

    pfmc-assessments/yellowtail_2025’s past year of commit activity
    Scheme 0 0 6 0 Updated Dec 27, 2024
  • CA_quillback_rockfish_2025 Public

    Quillback rockfish assessment for California in 2025

    pfmc-assessments/CA_quillback_rockfish_2025’s past year of commit activity
    R 0 0 13 0 Updated Dec 26, 2024
  • pfmc_assessment_handbook Public

    PFMC Groundfish Assessment Best Practices Handbook

    pfmc-assessments/pfmc_assessment_handbook’s past year of commit activity
    TeX 2 1 9 (1 issue needs help) 0 Updated Dec 24, 2024
  • nwfscSurvey Public

    Tool to pull and process NWFSC West Coast groundfish survey data for use in PFMC groundfish stock assessments

    pfmc-assessments/nwfscSurvey’s past year of commit activity
    R 10 8 23 (2 issues need help) 0 Updated Dec 23, 2024
  • sablefish_2025 Public

    Assessment repository for the 2025 assessment of sablefish off the West Coast of the U.S.

    pfmc-assessments/sablefish_2025’s past year of commit activity
    JavaScript 0 0 22 0 Updated Dec 19, 2024
  • california-data Public

    This serves as a space to discuss data related to stock assessments for California.

    pfmc-assessments/california-data’s past year of commit activity
    R 3 1 0 0 Updated Dec 18, 2024
  • indexwc Public

    Estimate indices of abundance for west coast fish species

    pfmc-assessments/indexwc’s past year of commit activity
    R 2 2 15 2 Updated Dec 16, 2024
  • nwfscDiscard Public

    Code to summarize discard rates and totals from the West Coast Groundfish Observer Program

    pfmc-assessments/nwfscDiscard’s past year of commit activity
    R 0 0 3 0 Updated Dec 12, 2024
  • nwfscDiag Public

    Tool to run diagnostics for U.S. West Coast groundfish stock assessments using Stock Synthesis

    pfmc-assessments/nwfscDiag’s past year of commit activity
    R 0 2 10 0 Updated Nov 13, 2024

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