run styler::style_pkg()

R/AgeingError.R

@@ -6,12 +6,12 @@
 #' @importFrom graphics hist lines mtext par
 #' @importFrom stats nlminb optim
 #' @importFrom utils read.table str write.csv
-#' 
+#'
 #' @references
 #' Punt, A.E., Smith, D.C., KrusicGolub, K., and Robertson, S. 2008.
 #' Quantifying age-reading error for use in fisheries stock assessments,
 #' with application to species in Australias southern and eastern scalefish and shark fishery.
 #' Canadian Journal of Fisheries and Aquatic Sciences 65: 1991-2005.
-#' 
+#'
 #' @keywords internal
 "_PACKAGE"

R/CreateData.R

@@ -1,8 +1,8 @@
 #' Read the ageing error data
-#' 
+#'
 #' @param DataFile Filename for input data
 #' @param NDataSet Number of data sets within `DataFile`
-#' @param verbose Return messages to the console (in addition to any output to 
+#' @param verbose Return messages to the console (in addition to any output to
 #' `EchoFile`)
 #' @param EchoFile A file path to a file that will be created or appended to if
 #'   it already exists to store information about your data inputs. The default
@@ -339,4 +339,4 @@ CreateData <- function(DataFile = "data.dat",
     print(str(Outs))
   }
   return(Outs)
-}
+}

R/CreateSpecs.R

@@ -1,5 +1,5 @@
 #' Read the ageing error specifications
-#' 
+#'
 #' @param SpecsFile Filename for input specifications.
 #' @param DataSpecs The output from CreateData()
 #' @param verbose Return messages to the console (TRUE/FALSE)
@@ -254,4 +254,4 @@ CreateSpecs <- function(SpecsFile = "data.spc",
     print(str(Outs))
   }
   return(Outs)
-}
+}

R/DoApplyAgeError.R

@@ -1,5 +1,5 @@
 #' Run the ageing error optimization routine
-#' 
+#'
 #' @param Species A string that will be used to create file names. Typically,
 #'   users will use the common name for the species of interest, especially if
 #'   you are saving files from multiple species in a single directory. Though,
@@ -296,4 +296,4 @@ DoApplyAgeError <- function(Species = "AgeingError",
   SaveAll$sdreport <- rep
   save(SaveAll, file = SaveFile)
   return(model)
-}
+}