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This repository has been archived by the owner on Jun 13, 2023. It is now read-only.

Releases: pfmc-assessments/geostatistical_delta-GLMM

Moved dependencies to `FishStatsUtils`

31 Oct 14:39
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This version is working with dependencies in FishStatsUtils, using .Deprecated to give warnings. This package is now itself deprecated and users are advised to switch to using VAST, which includes all the same features as well as others.

Added new option...

13 Oct 14:29
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... for user-supplied extrapolation-grid

Added continuous-integration and unit-testing

12 Aug 23:18
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Stable version with thorough testing, and new feature for 2D first-order autoregressive distribution for spatial and spatio-temporal variation

Simplified user-interface, now shown in "simple" example

06 Aug 20:26
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Added several functions to encapsulate pre-processing of data, plus an example for canary to compare future versions to, plus a new function to plot and process the index.

Added new function Param_Fn that makes tagged list...

30 Jan 18:52
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... and added error checks to Data_Fn, and generally improved documentation

Fixed a bug in sparse-matrix coersion

30 Jan 00:53
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3.1.1

Update README.md

Added new function Data_Fn that creates and documents data inputs...

29 Jan 18:15
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... and also simplified documentation using this function

Improved index calculation...

14 Jan 22:57
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... to allow post-processing of results that calculates multiple indices of abundance, which are not necessarily mutually exclusive.

Version with sample-specific catchability variables

14 Jan 05:07
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This version incorporates a new design matrix (Q_ik) that contains variables affecting catchability but not underlying density. The model then controls for these variables and predicts abundance for the reference value (Q_ik = 0). This is necessary to account for difference in catchability within season, between passes, etc.

Improved ECE and lognormal distributions...

13 Jan 22:21
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... to ensure that AIC model selection is comparable among observation models, and to ensure that the ECE distributions match nwfscDeltaGLM and the original Thorson Stewart Punt (2011 CJFAS) publication.