Releases: pfmc-assessments/geostatistical_delta-GLMM
Moved dependencies to `FishStatsUtils`
This version is working with dependencies in FishStatsUtils
, using .Deprecated
to give warnings. This package is now itself deprecated and users are advised to switch to using VAST
, which includes all the same features as well as others.
Added new option...
... for user-supplied extrapolation-grid
Added continuous-integration and unit-testing
Stable version with thorough testing, and new feature for 2D first-order autoregressive distribution for spatial and spatio-temporal variation
Simplified user-interface, now shown in "simple" example
Added several functions to encapsulate pre-processing of data, plus an example for canary to compare future versions to, plus a new function to plot and process the index.
Added new function Param_Fn that makes tagged list...
... and added error checks to Data_Fn, and generally improved documentation
Fixed a bug in sparse-matrix coersion
3.1.1 Update README.md
Added new function Data_Fn that creates and documents data inputs...
... and also simplified documentation using this function
Improved index calculation...
... to allow post-processing of results that calculates multiple indices of abundance, which are not necessarily mutually exclusive.
Version with sample-specific catchability variables
This version incorporates a new design matrix (Q_ik) that contains variables affecting catchability but not underlying density. The model then controls for these variables and predicts abundance for the reference value (Q_ik = 0). This is necessary to account for difference in catchability within season, between passes, etc.
Improved ECE and lognormal distributions...
... to ensure that AIC model selection is comparable among observation models, and to ensure that the ECE distributions match nwfscDeltaGLM and the original Thorson Stewart Punt (2011 CJFAS) publication.